| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2070 |
|---|
| Symbol | |
|---|
| ID | 5747631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 2264139 |
|---|
| End bp | 2265461 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641297152 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001563095 |
|---|
| Protein GI | 160897513 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.577602 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.86382 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCA CGGCTTATTC CCATCTGGCC GACGCCCAGG CCAGCGAGTT CGAGCGAAGC
GCGCTGTTCC TCGACCTGAA GAACCGCACG CACGAGCACC TGCTCAGCCG CATCGAGGAG
CTGGGTGCCG AGTTCGGCCG TTGGTCGCAG GCCGCCATCG CGCAGTTCGT GCTGATGGAG
CTGGACAGCT TCATCCGCCT GCACTCCGTG CCCGTCAACG AGCAGGAGGC GCTGCAGGTG
GCGCGCGCCC TCACGCGCGA GCTCACGGGA CTGGGGCCGC TGCAGCCGCT GCTGGAAGAC
CCGCTGGTCG AGGACATCCT CATCAACGGC CACGGCAACA TCTACGTCTC GCGCGGCGGC
GTGCTGCAGC GCGAGACGCT GCACTTCAAG GACGACGAGC ATGTGCTGCG CATCGTGCGC
CGCATCCTGG CGCCGCTGGG CCGGCGCCTG GACGAGTCCA GCCCCATGGT CGATGCCCGC
CTGCCCGATG GCGGGCGCAT CAACGTCATC ATCGAGCCGC TGTCCATCGA CGGCCCCTCG
GTCTCCATCC GCAAGTTCCG CAAGGACCCG CTGACACCGC CCGAACTGGT GCAGCTGGGC
ACCTTCAACC AGGACATCTG CCGCATCCTG GAGATGGCCG TGCAGGCGCG CTGCAACATC
CTGGTCAGCG GCGGCACCAG CTCGGGCAAG ACATCCCTGC TCAATGCGCT GGCCAGCTTC
ATCCCGGGCA GCGAGCGCAT CGTCTCCATC GAGGACACGG CCGAGCTGGC CCTCAACCAC
AACCACGTGG TGCGGCTGGA AAGCCGCCCC GGCGGCTTTG ACGGCTCGGG CCACGTCAGC
ATCCGCGACC TGCTGCGCAA CAGCCTGCGC ATGCGGCCCG ACCGCATCAT CGTCGGCGAG
GTGCGCGGCG GCGAGGTGCT GGAGCTGCTG CAGGCCATGA ACACCGGCCA CGACGGCTCC
ATGGGCACCA TCCATGCCAG CTCGCCGCGC GAATGCCTGT ACCGCGCCGA AATGCTGGCC
GGCTTCGCGG GCTTTCAGGG CAGCGAGGTC AGCCTGCGCC GCCAGATCGC CAATGCCGTG
GACTTCATCG TGCAGATCGG CCGCCTGTCC AACGGCCGCC GCCGCCTGCT GTCGCTGACC
GAGGTCACGG GCATGACGGA CAACATGATC TCCATGCAGG AGCTGTACCG CTACGAGCCC
CAGGTGGGCC CTGACGGGCA GGAGATCGAC CAGTGGGTGT CGCTGGGCAT CTCGCCGCAC
TCGCCCAAGC TGCTGAGCTG GTGGCGCATG CAGCAGCAGA CCGGCCACGG AGGCGTGCGA
TGA
|
|---|
| Protein sequence | MTTTAYSHLA DAQASEFERS ALFLDLKNRT HEHLLSRIEE LGAEFGRWSQ AAIAQFVLME
LDSFIRLHSV PVNEQEALQV ARALTRELTG LGPLQPLLED PLVEDILING HGNIYVSRGG
VLQRETLHFK DDEHVLRIVR RILAPLGRRL DESSPMVDAR LPDGGRINVI IEPLSIDGPS
VSIRKFRKDP LTPPELVQLG TFNQDICRIL EMAVQARCNI LVSGGTSSGK TSLLNALASF
IPGSERIVSI EDTAELALNH NHVVRLESRP GGFDGSGHVS IRDLLRNSLR MRPDRIIVGE
VRGGEVLELL QAMNTGHDGS MGTIHASSPR ECLYRAEMLA GFAGFQGSEV SLRRQIANAV
DFIVQIGRLS NGRRRLLSLT EVTGMTDNMI SMQELYRYEP QVGPDGQEID QWVSLGISPH
SPKLLSWWRM QQQTGHGGVR
|
|---|
| |