| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1916 |
|---|
| Symbol | |
|---|
| ID | 5747474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 2116384 |
|---|
| End bp | 2117307 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641296995 |
|---|
| Product | RecT protein |
|---|
| Protein accession | YP_001562941 |
|---|
| Protein GI | 160897359 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3723] Recombinational DNA repair protein (RecE pathway) |
|---|
| TIGRFAM ID | [TIGR00616] recombinase, phage RecT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.427469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000000000811142 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA TCCAAACCAT CTCCAACTTC GTCTACGGCG CGGAAGACAG CTTCCACAGC
GTGCTCGTGG ACCGCTCGAT CAACTTCGAG CGCGAGGCCG GCTTCGCCAT TCAGGTGCTG
ACGGCAGGTG ACTACATCGC CAAGTTGGCC GCCAACGACC GCCAGTCCGT GGTGAACGCG
GTGACCAACA TCGCGGCCAT CGGGATCAGC CTGAACCCGG CCAAGAAGCA GGCCTATCTG
GTGCCGCGCA AGGGAAAGAT CTGCCTGGAC ATCAGCTACA TGGGGCTGAT CGACCTGGCC
GTGCAGGCCG GCTCCATCCT GTGGGCTCAG GCGGATCTGG TCTACGCCAG CGACGCCTTC
ACGCTGAATG GCTTCGACCG GCCACCCACG CACTCCTACA ACCCATTCAG TCGCGAGCGC
GGAGAGTTGG TGGGCGCGTA TGTGGTGGTC AAGACGCCCA GCGGAGACTA CCTCACGGAC
TGCATGAGCC GCGAGGAGAT CGACGCTATC AAGAACCGCT CCGAGTCCGT GAAGGCGGGC
AAGTCGTCGC CCTGGGACAC CGACTACGGT GAGATGGCCA AGAAAACCGT GGTCAAGCGG
GCCTACAAGT ATTGGCCCAA GTCGGACCGC CTCGACCAAG CCATCCACCA CCTCAATACC
GAGGGCGGTG AGGGCCTGGC CACAGCGCAA CCGGCGCGCT CGGCTGCCAT TGACCCGCAG
CCCATCATCG AAGGACTGCG CCAGACCAAG ACCATTGAAG AACTGAAGGC CTATTGGGCA
GAGCAGAACG GCAGGCTTGC CAATGACCTG AGCGCCCATA ACGAACTGAA GGACGCCTAC
AGGGCTCACC TGGCGCGCAT CCGCGCGGAG ACCGCGAAGA ACGTAACCGA CGTGGAGGAC
AAGAATGCCG TGGATCAATC TTGA
|
|---|
| Protein sequence | MSAIQTISNF VYGAEDSFHS VLVDRSINFE REAGFAIQVL TAGDYIAKLA ANDRQSVVNA
VTNIAAIGIS LNPAKKQAYL VPRKGKICLD ISYMGLIDLA VQAGSILWAQ ADLVYASDAF
TLNGFDRPPT HSYNPFSRER GELVGAYVVV KTPSGDYLTD CMSREEIDAI KNRSESVKAG
KSSPWDTDYG EMAKKTVVKR AYKYWPKSDR LDQAIHHLNT EGGEGLATAQ PARSAAIDPQ
PIIEGLRQTK TIEELKAYWA EQNGRLANDL SAHNELKDAY RAHLARIRAE TAKNVTDVED
KNAVDQS
|
|---|
| |