Gene Daci_1576 details

Gene Information

• Locus tag: Daci_1576
• ID: 5747133
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Delftia acidovorans SPH-1
• Kingdom: Bacteria
• Replicon accession: NC_010002
• Strand: +
• Start bp: 1766809
• End bp: 1773222
• Gene Length: 6414 bp
• Protein Length: 2137 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641296657
• Product: CheA signal transduction histidine kinase
• Protein accession: YP_001562605
• Protein GI: 160897023
• COG category: [K] Transcription; [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0643] Chemotaxis protein histidine kinase and related kinases; [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.167147
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 0.557453
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGTTGACG AATCGCAAAC GGGCGCGGCG CAGGCCGCGC ACACCGAACA GGACCTGGGC 
CCGCTGGCCT GGGTGCTCGA TGAGCTGCGC AAGTCGCTGG AAGGGGCGAG CAAGGCGGTG 
GCCCGTTTCG TGCGCGATGC CGATGCGGCA CGCGCCTCGG ACCTTGAGGA ACTTGACACC 
TCGGCCCTGC GCATCGCCCG CCAGCAACTG CACCAGGCCT GCGGCGCCCT CGAAATGGTG 
GGCCTGGGCT CTCCGGCCCT GGTGCTGCGC GGCATGGAAA GCGCCGTGCA GCGCTTTGTG 
CAGCGCCCCG AGCTGTGCAC CGACCAGGCT GCCGCCACGC TGGAGCGCGC CAGCTTCGCA 
CTCATCGAAT ACCTGGAAAC CGTGCTGGCC GGCAAGACCG TCTCGGCCGT GGCCCTGTTT 
CCCCAATACC GTGACACCCA GGCGCTGGCC GGCAATGACA AGGTGCATCC GGCCGACCTG 
TGGCCTGCCG AGCGCCGCGC GCGCGAGCCC GAGTGGGCGC GCCAGCCCGA GCCGCTGGCC 
TACGGCCCCG ATGCCCGGGC CCTGCTCGAC GGCGTGGTGC TGCGCATGGT CAAGAGCGAC 
GACCGCGAGG CCGCCGCCCA GATGCGCGAC CTGTGCCTGC GCTTTGCCGT GGGCCAGACC 
GAGGATGTCA CCGCGCGCAG CTTCTGGAAG GTGGCGGCCG GCTTCTTCGA CGCGCAGTCG 
CGCGGGATGA TCGTGGTCGA CCTGTACGTC AAGCGCATGG CCTCGCGCGT GCTCATGCAG 
TACGCGGCCA TGGCCAAGGG CGACCGCACG CCGCCTGCGC GGCTGCTGCA GGACCTGCTG 
TTCTTCTGCG CCCAGGCCCG CCCTGCCGAG CAGGCTGGCG CCGCCCTGCA GGCGGTGCGC 
CAGGCCTACG GCATGCAGGC CCAGCCCCAG GTGGACTACC AGCAGACACG CTTTGGCCGC 
TACGACCCGG CGGTGCTGGT GCAGGCGCGC AAGCGCATCA CCACGGCAGC CGATACCTGG 
TCCGCCCTTG CCGGCGGCGA CCGTGCCCGC ACCAAGACCG TGGTGGACCA GTTCGCCCAG 
GTGGCCGAAT CCCTGGTCAA GCTGCACCCG GCCAGCCATG GCCTGGCGCG CATGCTGATC 
AAGGTGGCCG AAACCGTGGC CCGCATCGGC GAGCCGCCAC CGGCCGAACT GGCCATGGAA 
GTGGCCACCT CCGTGCTCTA CCTGCAGGCG GCCTTTGCCA CCATGGACAT GGGCGACGAG 
GAACTGGCCG AGCAGTCCGC CAACCTGGTC CAGCGCCTGG AGGAATCCCT GCAGGGCGCG 
CCCGCGCGTC CGCTGGAGCC CTGGATGGAG GAGCTGTACC GCCAGGCCAG CGACCACCAG 
ACCATGGGCT CGGTCGTGGG CGAGCTGCGT GCCACGCTGG CCGAGGCCGA GCGGCACCTG 
GACCAGTATT TCCGCAATCC TGCCGATGCC ACCGTGCTGG CACCCGTCTC GGGCCAGATG 
GCGCAGATGC GCGGCGTGCT GTCCGTGCTG GGCCTGGACC AGGCCACGCA GGCCATGCAG 
CGCATGCGCG AGACCGTGGA ACGGCTGGTG CTGGGTGAGA TCGACGACGC AGAGCGTCCG 
CAGGTGTTCG AGAAACTGGG CAACAGCCTG GGCGCCATGG GCTTTCTGAT CGACATGCTG 
AGCTACCAGC GCAGCATGGC GCGCAAGCTC TTCGTCTATG ACGAGGCCGA AGGCGGCCTG 
CGCATCCTCA TGGGCCGTCG CGGCCACCGG GCCGATGATG CGGGCAAGGC GCCCGAGCAA 
CTGCCCGCCC TGGATACCGC CGCCGTGCCG CCGCAGCGCG AAGCCGTTGC CGTGGCCCAG 
CCGCTGCCCG TGCCGCAGGA CGCCATCGCC GAGCCGCAAT TTGCCGCGCC CTCCACGCCG 
CCCCCGCCGC CCCCGCCGCC CCCGGCTCCC GTGGACATCG CGACCGAGCC GCTGGCGCAG 
CCCGCGGCCG CCGAGCAGGA CGCGCTGGCC GATGCCGCGG AACTGGCGCA ATTCGCCAAG 
GCCCTCGAAG CGCCGGCCGA GCCGGTCTTC CAGCTGGATC AGTCCCTGGC CGAGCCAGAG 
CCCGCAGCCG AATCTGCGCC TGAAACCGTC TCTGCATCCG TGTCCGAGCC CGTGCCCGTG 
CCCCCGCCGG CCGGCCTGTC GGTCTCGGAA GAAGACTCGG ACGACGAACT GCTGGGCATC 
TTCCTGGAAG AGGCCCGCGA GGTGGTGGAC AACGGCCTGC AGGCCCTGCG CGCCCTGGCC 
GACGAGCCGG GCAACCTCAG CGAGCAGACC ACGCTGCGCC GCGCCTTCCA TACGCTCAAG 
GGCAGTTCGC GCATGGTGGG CCTGGATGAA TTCGGCGAAG CCGGCTGGGC CATGGAGCAG 
ATGCTCAACG CCTGGCTGGC CGAGCAAAAG TCCATGCCCC AGCCCATGCA GGAGCTGGCC 
AGCGATGCGC TGCGCGCCTT TGGCGCCTGG GCCTCGGCCA TAGAGCGCCA CCAGGCCGAC 
GCCTGGCAGG CCACGCCTTT CCGCGCTGCG GCCGATGCCA TGCGCCTGGA AGGCCTGCGC 
GCCGACGTGG CCCTGGTGCC GCGCACACCG CGTGCCGAGC CCCTCGCACA GCCCGAACCC 
GAACTCGAGC CCGCACCCGC ACCCGCCGCA ATCGAGGAAT TCGCGCCCGT GGCCCAGGAG 
CCGCAGGCAG AACACCTGGA TGCGCCCGAG CAGGCCACGC CCGCCCAGCC CGTCCAGCCC 
TCTGGCGAGC TGGACTTTGC GCTGGACTTC GACCTGCTGG AGCCGGACCC CCAGCCTTCG 
GCCGCCGCGC CGCAGGAGTC GCTGGAGACA CTGACGCCGC AAGCCGCCGA GGCGCCTGCC 
GAACTGGCCA CCGACGCCGT CGAGGAACTG GACTTTGCGG CCTTCGAAGC CGCCATGCGC 
GACAGCGAGC AGGAGGCCCT GGCCGTCGTC GCGGGCGACC CGCCCGCGCT GCCCGAGGCC 
GCCGCCATCG AAGCCGAAGC CATCGAAGCC GAAGCCATCG AGGCCGAAGC TGGAACTGAA 
ACTGAAGCAC CGCAAGCCGC CGTGCCCCTG GCGCCTTTCG AAGGGCTGGA CCTGGATCTG 
GGCCTGACAC CGGCAGCGGC ACCCGCCGAA GCGATCGAGA TGATCGCGGT GCCAGAAACG 
GTTGAGGCGG TCGAAGCGGT CGAAGCGCCA GAAACGGTTG AAGCGGTTGA AGCATCCGAC 
GCAGTCGAGC TGGTCAAGGC GCCCGAGGTG CCCGAGGCAG AGACCCCGCA GGCCGAAGAG 
TCCGGCGACG AGGATCTGTC CGGCATCGAC GCCGATGGCT TCAAGATCGT GGATGGCCTG 
CGCATCAGCG CGCCGCTGTA CAACGTCTAC CTCAACGAGG CCGACGAATG GTCGCGCCGC 
CTGGACCTGA CGCTGCAGCA ATGGGCGACC GAGCCCGGCG AGCCCGTGCC CGACGACGCC 
GTCGCCTTTG CGCATTCGCT GGCCGGAAGC TCGGCCACCG TGGGCTTCAA GGCCTTGTCG 
GACCTGGCGC GCCTGCTGGA ACATACGCTG ACCCATCTGC AGCCGCAGCG CTGTGGCACG 
CCCGACCAGG TTGCCGCCTG CGTGGCGGCC TCCGACGAAG TGCAGCGCCT GCTGCACCAG 
TTCGCCGCCG GTTTCCTCAA GACGCCCCAG CCGGGCGTGG AAGAAGCCCT GCAGGCGCTG 
CTGGCGCTGG ACATCGAGGC CGCAGACGCG CCGGACAGCC GCCTGGACGC GCTGGAGCAG 
CTGGACCAAC TGGACCAACT GGAGCCTCAG GACGCCAGCG ATGGCACGGA CGCCGTGCTC 
GACGCCGGTG CCCAGGCGCA GACACCGTCG GTGGCGCCCC TGGCCTACTC CATGCGCCCC 
CTGGTCAACG ATGCGCGCCA CGAAGCCGAG CTGCAGCGCC GCATCGACGA GGCCATCGCC 
CATGCCGTGG CCGTGGGCAG CGACCTGGAC GATGACATCG ATGCGCTGGA CGAGGTCGAT 
CCCGACCTGT TCCCCATCTT CGAGGAAGAG GCCATCGAGC TGCTGCCCCG CCTGGGCGCC 
GCGCTGCGCC GCTGGCATGG CCGGCCCTCG CTGGACGAGG CGCGCCACGA AACCCTGCGC 
GCCCTGCACA CGCTCAAGGG CAGTGCCCGG CTGGCGGGCG CCATGCGCCT GGGCGAGATG 
GCCCACCGCC TTGAATCTGC CGTGGAGCGG GTCGATGGCG AATCTCCGAC CGCCGAGCAG 
ATCGAGCCCT TGCTGGGCAG CTTCGACGCG CTGCAGGCCG GCTTCGACGT GCTGCGCGTG 
GCCGGTGAGC AGGCGCAGGA AGCGCCGCTG GACCTGGGCG ATGAAATCTC CCACGACGAG 
CCCGCAGCGG CTGCGGCCTC CGACGCATCG GCAGCGGCTG GATCACCGGC GGCTGCGGCC 
CCTGTGCCAG CGCCTGTCAC TGCGCCGCTG CGCGCCGGTG CCCAGCAGAC GGTGCGCGTG 
CGCGCCCAAT TGCTGGACCG CCTGATCAGC CAGGCTGGCG AGGTGCTGAT TGCGCGCTCG 
CGTGTCGATG CGCGCCTGGC CCAGGCCCGT GGCTCGTTGG ACGAGCTGGC CGGCAACCTG 
GAGCGCCTGC GCATGCAGCT GCGCGACATC GAGGTCCAGG CCGAGAGCCA GATGCAGTCG 
CGCCTGGCCC TGTCCAAGGA CTCGGCCGTG GGCTTCGACC CGCTGGAGTT CGACCGCTTC 
ACGCGCGTGC AGGAACTCAC CCGCATGATG GCCGAGTCGG TCAACGACGT GGCCACCGTG 
CAGCGCAACC TGCAGCGCGA CATGGCTGGC GCCGAGGACG ACCTGGTCGC CCAGGGCCGC 
CAGGCCCGCG AGTTGCAGCG CGACCTGCTG CGCACGCGCA TGGTGGAGTT CGACTCCCTG 
GCCGAGCGCC TGTACGCCGT GGTCCGCCAG ACCTCCAAGG AGATGGGCAA GCAGGTGCGG 
CTGAACATCC TGGGCGGCAC CATTGAAATG GACCGGGGCA TGCTGGACCG CATGATGCCG 
GCCTTCGAGC ACTTGCTGCG CAACTGCGTG GCCCACGGCA TCGAGTCGCC CGAGCAGCGT 
GCCGCCGCAG GCAAGCCCGC CATGGGAACC ATTGAAATCA TCCTGAGCCA GGAGCGCAAC 
GACGTGGCGC TGTCGGTGGA GGACGATGGC GCCGGCCTGA ACCTGCAGCG CATCCGCGAC 
AAGGCCGTGG CCCAGGGCCT GTGGCCCGAG GACCAGACGC TGACGGAGCA GGACGCCGGC 
CGCCTGATCT TCGAGCCCGG CTTCACCACG GCCACCGAGG TGACCGGCGT GGCCGGGCGC 
GGCATCGGCA TGGACGTGGT GCGCTCCGAA GTCAACGCGC TGGGCGGCCG CATCGAAACC 
CACAGCGAGG CGGGCCGGGG CAGTGCCTTC CGCCTCGTGC TGCCGCTGAC GACCGCCGTC 
ACCCAGGTGG TCATGCTGCG CGCGGGCCAG TTGCTGGTCG GCGTGCCCGC CAGCCTGGTG 
GAAATCGTGC GCCGCGCGCC GCTGGAGCTG CTGCAGCAGG CCTATGCCAG CCACAGCTTC 
GAAGACGGCA GCGAGACCCT GCCTTTCTAC TGGGCCGGCG CGCTGTGGCA GTCCTCGCTG 
CGCAGCGAGG AAACCGTGGG CCGCACCCGG CCCGTGGTCA TCCTGCGCAG CGCGGCGCAG 
CGCATTGCGC TGCACGTGGA CGAAGTGCTG GGCAACCAGG AAGTGGTGAT CAAGAACCTC 
GGCCCCCAGC TGGCCCGCCT GCCCGGCCTG ACCGGCATGT CGGTGCTGGC CTCGGGCGCC 
GTGGTGCAGA TCTACAACCC CGTGGCGCTG GCCAACGTCT ATGGCGACGA GGTGCGCGCC 
CGGACCGAAG AGGCCGAGCG CGCCGCAGGC CAAGGCGACG GCGAAACCGT GCTGGCCAGC 
GCAGGGCCGG CCTCGGTGCC GCTGGTGCTG GTGGTGGACG ACTCCATCAC CGTGCGCCGC 
GTCACCCAGC GCCTGCTGCA GCGCGAAGGC TACCGCGTGG CCCTGGCGGC CGACGGCCTG 
CAGGCCATGG AGCGCCTGGC CGAGGAACGC CCGACCCTGG TGCTGTCCGA CATCGAGATG 
CCGCGCATGG ACGGCTTCGA CCTTCTGCGC AACATCCGCG CCGACGAGGC CCTGCGCGAC 
CTGCCCGTGG TCATGATCAC CTCGCGCATC GCCCAGAAGC ACCGCGAGAT GGCGCGCCAG 
CTGGGCGCCA ACCACTACCT GGGCAAGCCC TACTCGGACG AGGAACTGCT GGGCCTGATC 
CAGCACTACT CCCTGCAGGG CGGCAGCATC AGCGGCGGCC CGCTGGCGCC GCAGTCGCTG 
CAGGCGCAGC AGGCGCTGCA GGCGGATAGC GAGCCCCTGG GCGAAGGGGC CTGA 

 

Protein sequence

MVDESQTGAA QAAHTEQDLG PLAWVLDELR KSLEGASKAV ARFVRDADAA RASDLEELDT 
SALRIARQQL HQACGALEMV GLGSPALVLR GMESAVQRFV QRPELCTDQA AATLERASFA 
LIEYLETVLA GKTVSAVALF PQYRDTQALA GNDKVHPADL WPAERRAREP EWARQPEPLA 
YGPDARALLD GVVLRMVKSD DREAAAQMRD LCLRFAVGQT EDVTARSFWK VAAGFFDAQS 
RGMIVVDLYV KRMASRVLMQ YAAMAKGDRT PPARLLQDLL FFCAQARPAE QAGAALQAVR 
QAYGMQAQPQ VDYQQTRFGR YDPAVLVQAR KRITTAADTW SALAGGDRAR TKTVVDQFAQ 
VAESLVKLHP ASHGLARMLI KVAETVARIG EPPPAELAME VATSVLYLQA AFATMDMGDE 
ELAEQSANLV QRLEESLQGA PARPLEPWME ELYRQASDHQ TMGSVVGELR ATLAEAERHL 
DQYFRNPADA TVLAPVSGQM AQMRGVLSVL GLDQATQAMQ RMRETVERLV LGEIDDAERP 
QVFEKLGNSL GAMGFLIDML SYQRSMARKL FVYDEAEGGL RILMGRRGHR ADDAGKAPEQ 
LPALDTAAVP PQREAVAVAQ PLPVPQDAIA EPQFAAPSTP PPPPPPPPAP VDIATEPLAQ 
PAAAEQDALA DAAELAQFAK ALEAPAEPVF QLDQSLAEPE PAAESAPETV SASVSEPVPV 
PPPAGLSVSE EDSDDELLGI FLEEAREVVD NGLQALRALA DEPGNLSEQT TLRRAFHTLK 
GSSRMVGLDE FGEAGWAMEQ MLNAWLAEQK SMPQPMQELA SDALRAFGAW ASAIERHQAD 
AWQATPFRAA ADAMRLEGLR ADVALVPRTP RAEPLAQPEP ELEPAPAPAA IEEFAPVAQE 
PQAEHLDAPE QATPAQPVQP SGELDFALDF DLLEPDPQPS AAAPQESLET LTPQAAEAPA 
ELATDAVEEL DFAAFEAAMR DSEQEALAVV AGDPPALPEA AAIEAEAIEA EAIEAEAGTE 
TEAPQAAVPL APFEGLDLDL GLTPAAAPAE AIEMIAVPET VEAVEAVEAP ETVEAVEASD 
AVELVKAPEV PEAETPQAEE SGDEDLSGID ADGFKIVDGL RISAPLYNVY LNEADEWSRR 
LDLTLQQWAT EPGEPVPDDA VAFAHSLAGS SATVGFKALS DLARLLEHTL THLQPQRCGT 
PDQVAACVAA SDEVQRLLHQ FAAGFLKTPQ PGVEEALQAL LALDIEAADA PDSRLDALEQ 
LDQLDQLEPQ DASDGTDAVL DAGAQAQTPS VAPLAYSMRP LVNDARHEAE LQRRIDEAIA 
HAVAVGSDLD DDIDALDEVD PDLFPIFEEE AIELLPRLGA ALRRWHGRPS LDEARHETLR 
ALHTLKGSAR LAGAMRLGEM AHRLESAVER VDGESPTAEQ IEPLLGSFDA LQAGFDVLRV 
AGEQAQEAPL DLGDEISHDE PAAAAASDAS AAAGSPAAAA PVPAPVTAPL RAGAQQTVRV 
RAQLLDRLIS QAGEVLIARS RVDARLAQAR GSLDELAGNL ERLRMQLRDI EVQAESQMQS 
RLALSKDSAV GFDPLEFDRF TRVQELTRMM AESVNDVATV QRNLQRDMAG AEDDLVAQGR 
QARELQRDLL RTRMVEFDSL AERLYAVVRQ TSKEMGKQVR LNILGGTIEM DRGMLDRMMP 
AFEHLLRNCV AHGIESPEQR AAAGKPAMGT IEIILSQERN DVALSVEDDG AGLNLQRIRD 
KAVAQGLWPE DQTLTEQDAG RLIFEPGFTT ATEVTGVAGR GIGMDVVRSE VNALGGRIET 
HSEAGRGSAF RLVLPLTTAV TQVVMLRAGQ LLVGVPASLV EIVRRAPLEL LQQAYASHSF 
EDGSETLPFY WAGALWQSSL RSEETVGRTR PVVILRSAAQ RIALHVDEVL GNQEVVIKNL 
GPQLARLPGL TGMSVLASGA VVQIYNPVAL ANVYGDEVRA RTEEAERAAG QGDGETVLAS 
AGPASVPLVL VVDDSITVRR VTQRLLQREG YRVALAADGL QAMERLAEER PTLVLSDIEM 
PRMDGFDLLR NIRADEALRD LPVVMITSRI AQKHREMARQ LGANHYLGKP YSDEELLGLI 
QHYSLQGGSI SGGPLAPQSL QAQQALQADS EPLGEGA