Gene Daci_1453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1453 
SymboldapF 
ID5747009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1626838 
End bp1627698 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content69% 
IMG OID641296533 
Productdiaminopimelate epimerase 
Protein accessionYP_001562482 
Protein GI160896900 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0253] Diaminopimelate epimerase 
TIGRFAM ID[TIGR00652] diaminopimelate epimerase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGATCC GCTTTACCAA GATGCAGGGC GCTGGCAACG ATTTCGTGGT TCTCGACGAA 
ACCGCCGGCC CGCTGGGCCT GAGCGCAGCC CAGTACCGCT TCCTCGCCCA TCGCCAATTC
GGCGTGGGCG CCGACCAGAT CCTCACGGTG CGGCCCTCGC CCGCCGAAGG CATCGATTTC
GAATATGTGA TCCACAACGC CGACGGCGGC GAGGTCGAGC AGTGCGGCAA CGGCGCGCGC
TGCTTTGCGC GCTATGTGCA CGACAAGGGC CTGACCGGCA AGTCCGTCAT CCGCGTGCAG
ACGCTGGCCG GCCTCATCGC CCCCGAGCTG CATGCCGATG GCCGCGTCAC CGTGGACATG
GGCCAGCCCG TGCTGGAGCC CTCCCTGGTG CCCTTCAATG GTGCAGACCT TGTGCCCCGC
CCGCTGGGTG CGGCGCAGCA ATGGCCCCTG CAGCTGGGCG ACGAGGCCAC GGTCTGGATC
GCCCCCGTTT CCATGGGCAA CCCGCATGCG GTGCAACTGG TGGACGATGT GGACCACGCC
CCCGTGGCCA CCTGGGGCCC GCTGATCGAG CGCCATGTGC GCTTTCCCCA GCGCGTCAAT
GCGGGATTCA TGCAGATCGT CGATCGCGGC CAGATCCGGC TGCGTGTTTA CGAGCGCGGT
GCCGGCGAGA CGCTGGCCTG CGGCACGGGC GCCTGCGCGG CCGTGGTGGC CGGCATTCGC
TGGGGGCTGC TCGACGCGCG CGTCGATGTG CACACCCGCG GCGGCCGGCT GACCATCGAG
TGGGACGGCG GCGCGGTGCG CATGACCGGC CCCGCAGAGT TTGTTTTTGA AGGACAGATC
GAGGTTCCCG ACCAGCCATG A
 
Protein sequence
MQIRFTKMQG AGNDFVVLDE TAGPLGLSAA QYRFLAHRQF GVGADQILTV RPSPAEGIDF 
EYVIHNADGG EVEQCGNGAR CFARYVHDKG LTGKSVIRVQ TLAGLIAPEL HADGRVTVDM
GQPVLEPSLV PFNGADLVPR PLGAAQQWPL QLGDEATVWI APVSMGNPHA VQLVDDVDHA
PVATWGPLIE RHVRFPQRVN AGFMQIVDRG QIRLRVYERG AGETLACGTG ACAAVVAGIR
WGLLDARVDV HTRGGRLTIE WDGGAVRMTG PAEFVFEGQI EVPDQP