Gene Daci_1309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1309 
Symbol 
ID5746864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1452998 
End bp1455457 
Gene Length2460 bp 
Protein Length819 aa 
Translation table11 
GC content63% 
IMG OID641296388 
Productgeneral secretion pathway protein D 
Protein accessionYP_001562338 
Protein GI160896756 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1450] Type II secretory pathway, component PulD 
TIGRFAM ID[TIGR02517] general secretion pathway protein D 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0418049 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0430257 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTTC CCAACCGCCC CGTGCGCACC GTGCTGGCGT TGGCTGTCTG CCAACTGCTG 
CTGGCTTGCG CGCAACCCAA TAGAAACAAC TTCGTCAGCC ACTTCAGTGA AGCAAGCTCT
GCGCAGGATT TTTCCTTTGC TGCAGACGAG GCAGATGGCT CCGTGAAAAC GGGCAAGAAG
AAGAGCGAGT CCGACGAGTC CCAGCCCCGG GTGATCGAAG GCACCGGAAA GCTGCTGGGC
AAGGCCCAGG ATGCGCCTGC CGTCAAGGGG GACTCCATCA AGCTCAGCTT CGAGGAAGCC
CCCCTGGCCC AGGTCGTGCG AACCATACTG GGCGACCTGC TGTCGGTCGA CTATGTGCTG
CACCCGCCCA TCTCCGGCAC GGTCACGATG AGCACGCAGA ATGCCGTCTC GGCGGATCAG
GCGCTCAATC TTCTCGAAAC CGCACTGCAG GCCAACGGCA TGGCCATGGT GCGCGATGTG
CGGGGCACTT ACCACGTGGG CCGCATCGAT GCACTCAAGA GCATTGGCGC GAGCGTGCGC
CAGGCAAGCG TCGGCACTCA GATGGCTCCC GGCTACGGCA CCATCCTCGT GCCGCTCCAG
TACATCGGCG CCAATGAAAT GGCGGCCATC CTGCGTCCCA TGGTTCCCTC CGACGCCATC
GTGCGCGTGG ACAACGTGCG CAACTTGCTG GTCATGGCGG GCTCGCGCGC CCAGGCCGAA
GGCTGGCTCG ACATGGTTCG CACTTTCGAC ATCAACCTGC TTGAAGGCAT GTCGGTGGGT
GTGTTCCCAC TCAAGTATGT CTCGGTGCAG GAGGTGAGCG CGGCCCTGCA GCTGGTCGGC
GGTGGGGGTG CCGCCGCAGG TGCCCAGGGG GCCGTGGCTC CTGCAGGTGC CGCCGCCGTG
CGCTCTGGTA CGGTGCCCGG TACGGCAGCG GCCGGGGCCG CCAGCGCGGT CGCTGGCCTG
GGTGAAGGCA ACCCGCTATT TGGCGCTTTG CGCATCATGC CAATAGAGCG GCTCAACAGC
ATCCTCGTCA TCACGCCGCG TGCAGCCTAT CTGGAGGAGG CTCGTCGCTG GATTGCCAAG
CTGGACCAGC CTGGCAGCGG TGGCAGTCAG GCACAACTGA ACATCTACCG CGTGCAAAAC
GGCAATGCCC GGCATCTGGC GGGTGTGCTG TCCGGTATCT TCGGTGGTTC CACGGGCGGC
ACCAGCACCA ACAGCGGCGT CGCGCCGGGA CTGGGCACCT CGACCAACAC GGGGTTCGGC
AACAGCAGCT TCGGAAACAG CAGCTTTGGC AACAGTAGCT TCGGCAACAG TAGCTTCGGC
AACAGTAGCT TCGGCAACAG CGGGTTCGGC AACAGCGGGT TCGGCAACAG CGGGTTCGGC
AATAGTGGAT TCAACTCGGG CACTGGACTG CGCACGGGCA GCACGGGTTT CGGGCAATCG
GGCGTTGGCT CACAAACCGG CATCAACCAG GGCACGGGTT CCACCGTGGC CAACCTGGGC
ACCGTGCGGG TCATGGCCGA TGAGCTCAAC AATTCGGTGC TGGTCTGGAG TACCCCCGCT
GAATACGAAC GCATCGAGGC TGCACTCAAG CGGCTGGATC TGCCTCCCAC CCAGATCCTC
ATCGAAGCCA GCATCGTCGA GGTCACGCTC AATGATGGCC TGCAGTACGG CTTGCAGTGG
GCATTCAGCG GAGATGTCGG CAACAACGGG TACTCGGGCT CGGGCCTGAT CTCCACGGAT
GGCAAGCGCA CCACGGCGGA CATCGCTGCG GCCATCGGAC AGGGCTTCAA CTACACCCTG
AAGAATTCGG CAGGCACGAT CAAGGCAGCG CTGAACGCTC TGTCCAGCAA GACCAATGTC
AAGGTGGTGG CGAGTCCCTC GCTGATGGTG CTGGACAACC ACACGGCGGC AATTTCGGTC
GGCACGCAGC AGCCTTACCG GTCCGGCGAG ATTTCCACCA CAACGGTGGG AAGCAGCAAC
GCCGTCAGCT ATCAGTACAA GGACACCGGC GTGAACCTGC AGGTCACGCC CTCGGTTAAC
GCCGGCAACA TCGTCACCAT GACCGTCAAC CAGATGGTGA CCGATGTGGG GGCGAAGGAT
GAAATCACCC AGCAGGTCAC CTTCCTGCAG CGGCAGCTGT CCAGCCGGGT GTCGGTGCGC
TCGGGGGAGT CCATCGTCAT GGGAGGCCTG ATCCAGGAGA ATACCTCTGA CGGACGCAGC
GGCATTCCAG TGCTACATGA GCTCCCAGTG GTGGGGAACC TTTTTGGTTC AACCAATAAT
TCGATGCGGC GCACCGAACT GCTCGTCATC ATCACGCCGC GCGTGGTACG CACCGATGTG
GACATACGCG AGGTCAGCGA AGATCTGCGC GAGCACATGC GCTCGCTGTC GCCACTGCTC
AGAACTCCTG CACAGCAAAA CAGCTCCAAC GTCCCGTCCC AGCCAGAACG CCCCCAGTGA
 
Protein sequence
MKFPNRPVRT VLALAVCQLL LACAQPNRNN FVSHFSEASS AQDFSFAADE ADGSVKTGKK 
KSESDESQPR VIEGTGKLLG KAQDAPAVKG DSIKLSFEEA PLAQVVRTIL GDLLSVDYVL
HPPISGTVTM STQNAVSADQ ALNLLETALQ ANGMAMVRDV RGTYHVGRID ALKSIGASVR
QASVGTQMAP GYGTILVPLQ YIGANEMAAI LRPMVPSDAI VRVDNVRNLL VMAGSRAQAE
GWLDMVRTFD INLLEGMSVG VFPLKYVSVQ EVSAALQLVG GGGAAAGAQG AVAPAGAAAV
RSGTVPGTAA AGAASAVAGL GEGNPLFGAL RIMPIERLNS ILVITPRAAY LEEARRWIAK
LDQPGSGGSQ AQLNIYRVQN GNARHLAGVL SGIFGGSTGG TSTNSGVAPG LGTSTNTGFG
NSSFGNSSFG NSSFGNSSFG NSSFGNSGFG NSGFGNSGFG NSGFNSGTGL RTGSTGFGQS
GVGSQTGINQ GTGSTVANLG TVRVMADELN NSVLVWSTPA EYERIEAALK RLDLPPTQIL
IEASIVEVTL NDGLQYGLQW AFSGDVGNNG YSGSGLISTD GKRTTADIAA AIGQGFNYTL
KNSAGTIKAA LNALSSKTNV KVVASPSLMV LDNHTAAISV GTQQPYRSGE ISTTTVGSSN
AVSYQYKDTG VNLQVTPSVN AGNIVTMTVN QMVTDVGAKD EITQQVTFLQ RQLSSRVSVR
SGESIVMGGL IQENTSDGRS GIPVLHELPV VGNLFGSTNN SMRRTELLVI ITPRVVRTDV
DIREVSEDLR EHMRSLSPLL RTPAQQNSSN VPSQPERPQ