Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_1309 |
Symbol | |
ID | 5746864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 1452998 |
End bp | 1455457 |
Gene Length | 2460 bp |
Protein Length | 819 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641296388 |
Product | general secretion pathway protein D |
Protein accession | YP_001562338 |
Protein GI | 160896756 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0418049 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0430257 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTC CCAACCGCCC CGTGCGCACC GTGCTGGCGT TGGCTGTCTG CCAACTGCTG CTGGCTTGCG CGCAACCCAA TAGAAACAAC TTCGTCAGCC ACTTCAGTGA AGCAAGCTCT GCGCAGGATT TTTCCTTTGC TGCAGACGAG GCAGATGGCT CCGTGAAAAC GGGCAAGAAG AAGAGCGAGT CCGACGAGTC CCAGCCCCGG GTGATCGAAG GCACCGGAAA GCTGCTGGGC AAGGCCCAGG ATGCGCCTGC CGTCAAGGGG GACTCCATCA AGCTCAGCTT CGAGGAAGCC CCCCTGGCCC AGGTCGTGCG AACCATACTG GGCGACCTGC TGTCGGTCGA CTATGTGCTG CACCCGCCCA TCTCCGGCAC GGTCACGATG AGCACGCAGA ATGCCGTCTC GGCGGATCAG GCGCTCAATC TTCTCGAAAC CGCACTGCAG GCCAACGGCA TGGCCATGGT GCGCGATGTG CGGGGCACTT ACCACGTGGG CCGCATCGAT GCACTCAAGA GCATTGGCGC GAGCGTGCGC CAGGCAAGCG TCGGCACTCA GATGGCTCCC GGCTACGGCA CCATCCTCGT GCCGCTCCAG TACATCGGCG CCAATGAAAT GGCGGCCATC CTGCGTCCCA TGGTTCCCTC CGACGCCATC GTGCGCGTGG ACAACGTGCG CAACTTGCTG GTCATGGCGG GCTCGCGCGC CCAGGCCGAA GGCTGGCTCG ACATGGTTCG CACTTTCGAC ATCAACCTGC TTGAAGGCAT GTCGGTGGGT GTGTTCCCAC TCAAGTATGT CTCGGTGCAG GAGGTGAGCG CGGCCCTGCA GCTGGTCGGC GGTGGGGGTG CCGCCGCAGG TGCCCAGGGG GCCGTGGCTC CTGCAGGTGC CGCCGCCGTG CGCTCTGGTA CGGTGCCCGG TACGGCAGCG GCCGGGGCCG CCAGCGCGGT CGCTGGCCTG GGTGAAGGCA ACCCGCTATT TGGCGCTTTG CGCATCATGC CAATAGAGCG GCTCAACAGC ATCCTCGTCA TCACGCCGCG TGCAGCCTAT CTGGAGGAGG CTCGTCGCTG GATTGCCAAG CTGGACCAGC CTGGCAGCGG TGGCAGTCAG GCACAACTGA ACATCTACCG CGTGCAAAAC GGCAATGCCC GGCATCTGGC GGGTGTGCTG TCCGGTATCT TCGGTGGTTC CACGGGCGGC ACCAGCACCA ACAGCGGCGT CGCGCCGGGA CTGGGCACCT CGACCAACAC GGGGTTCGGC AACAGCAGCT TCGGAAACAG CAGCTTTGGC AACAGTAGCT TCGGCAACAG TAGCTTCGGC AACAGTAGCT TCGGCAACAG CGGGTTCGGC AACAGCGGGT TCGGCAACAG CGGGTTCGGC AATAGTGGAT TCAACTCGGG CACTGGACTG CGCACGGGCA GCACGGGTTT CGGGCAATCG GGCGTTGGCT CACAAACCGG CATCAACCAG GGCACGGGTT CCACCGTGGC CAACCTGGGC ACCGTGCGGG TCATGGCCGA TGAGCTCAAC AATTCGGTGC TGGTCTGGAG TACCCCCGCT GAATACGAAC GCATCGAGGC TGCACTCAAG CGGCTGGATC TGCCTCCCAC CCAGATCCTC ATCGAAGCCA GCATCGTCGA GGTCACGCTC AATGATGGCC TGCAGTACGG CTTGCAGTGG GCATTCAGCG GAGATGTCGG CAACAACGGG TACTCGGGCT CGGGCCTGAT CTCCACGGAT GGCAAGCGCA CCACGGCGGA CATCGCTGCG GCCATCGGAC AGGGCTTCAA CTACACCCTG AAGAATTCGG CAGGCACGAT CAAGGCAGCG CTGAACGCTC TGTCCAGCAA GACCAATGTC AAGGTGGTGG CGAGTCCCTC GCTGATGGTG CTGGACAACC ACACGGCGGC AATTTCGGTC GGCACGCAGC AGCCTTACCG GTCCGGCGAG ATTTCCACCA CAACGGTGGG AAGCAGCAAC GCCGTCAGCT ATCAGTACAA GGACACCGGC GTGAACCTGC AGGTCACGCC CTCGGTTAAC GCCGGCAACA TCGTCACCAT GACCGTCAAC CAGATGGTGA CCGATGTGGG GGCGAAGGAT GAAATCACCC AGCAGGTCAC CTTCCTGCAG CGGCAGCTGT CCAGCCGGGT GTCGGTGCGC TCGGGGGAGT CCATCGTCAT GGGAGGCCTG ATCCAGGAGA ATACCTCTGA CGGACGCAGC GGCATTCCAG TGCTACATGA GCTCCCAGTG GTGGGGAACC TTTTTGGTTC AACCAATAAT TCGATGCGGC GCACCGAACT GCTCGTCATC ATCACGCCGC GCGTGGTACG CACCGATGTG GACATACGCG AGGTCAGCGA AGATCTGCGC GAGCACATGC GCTCGCTGTC GCCACTGCTC AGAACTCCTG CACAGCAAAA CAGCTCCAAC GTCCCGTCCC AGCCAGAACG CCCCCAGTGA
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Protein sequence | MKFPNRPVRT VLALAVCQLL LACAQPNRNN FVSHFSEASS AQDFSFAADE ADGSVKTGKK KSESDESQPR VIEGTGKLLG KAQDAPAVKG DSIKLSFEEA PLAQVVRTIL GDLLSVDYVL HPPISGTVTM STQNAVSADQ ALNLLETALQ ANGMAMVRDV RGTYHVGRID ALKSIGASVR QASVGTQMAP GYGTILVPLQ YIGANEMAAI LRPMVPSDAI VRVDNVRNLL VMAGSRAQAE GWLDMVRTFD INLLEGMSVG VFPLKYVSVQ EVSAALQLVG GGGAAAGAQG AVAPAGAAAV RSGTVPGTAA AGAASAVAGL GEGNPLFGAL RIMPIERLNS ILVITPRAAY LEEARRWIAK LDQPGSGGSQ AQLNIYRVQN GNARHLAGVL SGIFGGSTGG TSTNSGVAPG LGTSTNTGFG NSSFGNSSFG NSSFGNSSFG NSSFGNSGFG NSGFGNSGFG NSGFNSGTGL RTGSTGFGQS GVGSQTGINQ GTGSTVANLG TVRVMADELN NSVLVWSTPA EYERIEAALK RLDLPPTQIL IEASIVEVTL NDGLQYGLQW AFSGDVGNNG YSGSGLISTD GKRTTADIAA AIGQGFNYTL KNSAGTIKAA LNALSSKTNV KVVASPSLMV LDNHTAAISV GTQQPYRSGE ISTTTVGSSN AVSYQYKDTG VNLQVTPSVN AGNIVTMTVN QMVTDVGAKD EITQQVTFLQ RQLSSRVSVR SGESIVMGGL IQENTSDGRS GIPVLHELPV VGNLFGSTNN SMRRTELLVI ITPRVVRTDV DIREVSEDLR EHMRSLSPLL RTPAQQNSSN VPSQPERPQ
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