| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1279 |
|---|
| Symbol | |
|---|
| ID | 5746834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 1422776 |
|---|
| End bp | 1423657 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641296358 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001562308 |
|---|
| Protein GI | 160896726 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR03339] aminoethylphosphonate catabolism associated LysR family transcriptional regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGTCA CGCAGCTCAA GTCCTTTTTC TGGGTCGCCC GCCTTGGCAG CATCACGCAA
GCCGCGCGCC AGCTCGCACT GAGCCAGCCC ACCGTGACCA CCCAGATCCG CGCGCTGGAA
GAGCACTACG GCGTGGAGCT GTTCCATCGC CAGGGCGGAC GGCTGTCCAT CACCGATGCC
GGCTTGCGCC TGCTGCCCCA GGTCGAGCAA TTGCTGCTGC AGACCATCCA GCTGGAGTCG
GCGCTGCGCC ATTCGGGCGA TGCCAGCCAG GGCCAGCTGC GCATAGGCGC GACGGCGCCC
TACTACGTGC TGGACATCGT CAAGCGCTAC CAGCGGCGCT TCGAGCGGGT GGAAGTGGCC
ATCGTGGGCG GCAACTCGCG CCAGATGGTG CAGGCGTTGG TGGACTACCA GGTGGACCTG
GCGACCTCAT CGCACCTGGA AGGTGATCCG CGCCTGCTGC GCGTGGAGCT GGGCCAGGAC
CCGCTGGCCC TGCTGGTGCA CCGCAGCCAC CGGCTGGCGC AGCGCACCAT GGTGCAGGCG
TCCGATCTGG TGCACGACAC GCTGATCCTG CGCGAGCGCG GCTCCATGAC GCGCCAGCTC
ACCGAGCAGA TGCTGGCCGC CGCCGGCCTG GCACCGCGCC ACATCATGGA AATCGCCAGC
CGCGAAGCCA TCCGCGAGGC CGTGATCCGC GACATGGGCA TCAGCGTCTT CGCCCGGCAT
GAAGCCTCGG CCCACCCCGA CATAGTCGTC CTGCCCTTCG CAGGCCCCGT GCCGCGCCTG
CCCGAATACC TGTACTGCCT GCGCGAACGC CGCCAGGCCC GGCTGATCGC CGGCTTTCTG
GAGGAAGCCG TGCCGGGCGG TGTGCTGCCG GACCAGATGT GA
|
|---|
| Protein sequence | MFVTQLKSFF WVARLGSITQ AARQLALSQP TVTTQIRALE EHYGVELFHR QGGRLSITDA
GLRLLPQVEQ LLLQTIQLES ALRHSGDASQ GQLRIGATAP YYVLDIVKRY QRRFERVEVA
IVGGNSRQMV QALVDYQVDL ATSSHLEGDP RLLRVELGQD PLALLVHRSH RLAQRTMVQA
SDLVHDTLIL RERGSMTRQL TEQMLAAAGL APRHIMEIAS REAIREAVIR DMGISVFARH
EASAHPDIVV LPFAGPVPRL PEYLYCLRER RQARLIAGFL EEAVPGGVLP DQM
|
|---|
| |