Gene Daci_1072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1072 
Symbol 
ID5746627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1182307 
End bp1183905 
Gene Length1599 bp 
Protein Length532 aa 
Translation table11 
GC content68% 
IMG OID641296152 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001562102 
Protein GI160896520 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.334483 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGATT CCGAGACCCT CATTCCCCTG CATGAGGCCC TGCGCCGCAA TGCGCGCAAC 
CACCCCGGCC GCGACGCCTA CATCTGGTAT GGCCGCCACA TCAGCTGGGC CGAGGTGGAT
GCGGCCAGCG ACGCCTTTGC CGCGCGGCTG CAGGCGCTGG GCGTGGGCCG AGGCGAGCCC
GTGGCGCTGT TCATGAACAA CTGCCCGCAG TACATCGTGG CGCACTACGG CATCCAGAAG
ATCGGCGCCA TCGTCTGCCC CTGCGGGCCG CTGAACAAGG AGCATGAGCT GCAGTACCAG
CTCGATGACC TCAAGGCCCG CGTCATCGTC GCGGCCGATG TGCTGCTGCC CGTGGTGGAC
AAGGTGCGCG CCAGCACGGC GCTCAGGCAT GTGCTGGCCG TGCGCTATGG CGACTGGCTT
CCTGAATCGG CCACGCTGGC ACTGCCGCCC GAACTGCTGG CCCCCGTGCA GCCGCTGCCC
GAGGGCGTGG AATCGTTCTG GGATGTCATG CACAGCGGCG CCAAGCCCGT GCCCGTCGAT
GTCGCCATGG ACGATGTCTC GCTGATGACC TATACCTCGG GCACCACGGG CCTGCCCAAG
GGCGCCATGC TCAGCTACGG CAACGCGGCC AGCAAGACGG CCGGCGCCTC CAGCGCCACG
GGCGTGAACG CCGGGGACAT GCTGCTGGCC GTGGCGCCGC TCTATCACAT TGCCGGCATG
TCCATGGGCG TGAACATGCC CGTGCACAGC GGCGCCACCT GCGTGCTGCT GCACCGCTTC
GACCCGCTGG CCGTGGCCCA GGCGCTGGAG CGCTACCGCG TGACCTGGTG GTACAGCATC
GCGCCCATGA ACGTGGCCGT GATGCAGCTG CCGGGCGTGG AGGCCATGGA CTTTTCCGCG
CTGCGCCGCA ACACGGTGAC CAGCTTCGGC ATTGCCTACA CCGAGGAGCT GGCGCGGCAG
TGGAAGCGCT TCACCCCGAA CTGCATCTCC AGCGAGGCGG CCTATGGCCT CAGCGAGACC
CACACCATGG ACACCTCCAT GCCGGGCGAC GCCATCCGCT GGGGCACGCA CGGCAAGCCG
CTGCCCGGCA ACGAGGTGCG CATCATCGAC CCCGAGACCG GCGAGCCCCT GCCGGCCGGC
GAAGTGGGCG AGATCACCAT CCGCGGCCCC GGCAACTTCA AGGGCTACTG GAACAAGCCC
GAGGCCACGG CCAGGACCCT GAAGAACGGC TGGGTCCACA CGGGCGACAT GGGCCGCATC
GACGCCGATG GCTACCTGAC CTTCATCGGC CGCTTCAAGG AAATGATCAA GGTCTCGGGC
TACAGCGTCT TCCCCGAGGA GGTGGAAGCC ATCCTCATCA AGCATCCGGC CGTGGCCCAG
GCCGCCGTGA TCGGCGTGCC CGACCCGCAC AGGGGCGAGG TCGTGCGCGC CTTCATCGTC
ACGCGGCCGG GCCGGCAGAT CGCGGCCGAG GATCTTGTGC AGTGGTCGCG CGAGAACATG
GCCAGCTACA AGGCGCCGCG CGAGGTGCGT TTCATCGAGG CGCTGCCTGC CACCGGCGCG
GGCAAGGTGC TGCGCAGGAT GTTGAAAGAC ACCCCCTGA
 
Protein sequence
MADSETLIPL HEALRRNARN HPGRDAYIWY GRHISWAEVD AASDAFAARL QALGVGRGEP 
VALFMNNCPQ YIVAHYGIQK IGAIVCPCGP LNKEHELQYQ LDDLKARVIV AADVLLPVVD
KVRASTALRH VLAVRYGDWL PESATLALPP ELLAPVQPLP EGVESFWDVM HSGAKPVPVD
VAMDDVSLMT YTSGTTGLPK GAMLSYGNAA SKTAGASSAT GVNAGDMLLA VAPLYHIAGM
SMGVNMPVHS GATCVLLHRF DPLAVAQALE RYRVTWWYSI APMNVAVMQL PGVEAMDFSA
LRRNTVTSFG IAYTEELARQ WKRFTPNCIS SEAAYGLSET HTMDTSMPGD AIRWGTHGKP
LPGNEVRIID PETGEPLPAG EVGEITIRGP GNFKGYWNKP EATARTLKNG WVHTGDMGRI
DADGYLTFIG RFKEMIKVSG YSVFPEEVEA ILIKHPAVAQ AAVIGVPDPH RGEVVRAFIV
TRPGRQIAAE DLVQWSRENM ASYKAPREVR FIEALPATGA GKVLRRMLKD TP