Gene Daci_1030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1030 
Symbol 
ID5746584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1145951 
End bp1147684 
Gene Length1734 bp 
Protein Length577 aa 
Translation table11 
GC content65% 
IMG OID641296110 
Productextracellular solute-binding protein 
Protein accessionYP_001562061 
Protein GI160896479 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAC GACTTCATAC CATCGCCCTC GCGGCGGCCC TGCTGGCGGC GGGGCAGGCG 
TCCTGGGCCG GAGAGGCGGA AGCCAAGAAG TGGATCGACG CGGAGTTCCA GCCCAGCACG
CTGTCCAAGG ACCAGCAGAT GGCCGAGATG AAGTGGTTCA TCGAGGCGGC CAAGAAGCTG
CAGGCCAAGG GCGTCAAGGA GATCGCCGTG GTGTCCGAGA CCATCACCAC GCACGAGTAC
GAGAGCAAGA CGCTGGCCAA GGCCTTCACC GAGATCACGG GCATCACCGT CAAGCACGAC
CTGATCCAGG AAGGCGACGT GGTCGAGAAG CTGCAGACCT CGATGCAGTC GGGCAAGTCC
ATCTATGACG GCTGGATCTC CGACTCCGAC CTGATCGGCA CGCACTACCG CTACGGCCGC
ATCATGAGCC TGACCGACTA CATGGCCGGC GCCGGCAAGG ACTTCACCAA TCCGGGCCTG
GACATCAAGG ACTTCATCGG CACCAGCTTC ACCACCGCGC CCGACGGCAA GCTCTACCAG
CTGCCCGACC AGCAGTTCGC CAACCTCTAC TGGTTCCGCG CCGACCTCTT CGAGCGCAAG
GACCTCAAGG ACAAGTTCAA GGCCAAGTAC GGCTACGAGC TGGGCGTGCC GCTGAACTGG
AGCGCCTACG AGGACATCGC CGAGTTCTTC ACCAACGACG TCAAGCAGAT CGACGGCAAG
CCCATCTACG GCCACATGGA CTACGGCAAG AAGGACCCGT CGCTGGGCTG GCGCTTCACC
GATGCCTGGC TGTCCATGGC CGGCGCGGCC GACAAGGGCA TTCCCAACGG CATGCCCGTC
GATGAATGGG GCATCCGCGT GGCCGACGAC AAGTGCACGC CCGTGGGCGC CTCGGTCTCG
CGCGGGGGCG CCACCAACTC GCCGGCCGCC GTGTTCGCGC TCACCAAGTA CGTGGACTGG
ATGAAGAAAT ACGCGCCCAA GGAAGCCATG GGCATGACCT TCGGCGAGTC CGGCCCCGTG
CCGGCCCAGG GCCATATCGC GCAGCAGATC TTCTGGTACA CCGCCTTCAC GGCCGACATG
ACCAAGCCCG GCCTGCCCGT GGTCAATGCC GACGGCACGC CCAAATGGCG CATGGCGCCC
GGCCCCAACG GCCCCTACTG GAAGGACGGC ATGCAAAACG GCTACCAGGA CGTGGGCAGC
TGGACCTTCT TCAAGGACCA TGACGCCAAC CGCACGGCCG CCGCCTGGCT CTACGCGCAG
TTCGTCACCG CCAAGACCAC CAGCCTCAAG AAGACCATCG TCGGCCTGAC GCCCATCCGC
GAAAGCGACA TCCGCTCCAA GGCCATGACC GACATGGCGC CCAAGCTCGG CGGCCTGGTC
GAGTTCTACC GCAGCCCCGC CCGCGTGGCC TGGACGCCCA CCGGCAACAA CGTGCCCGAC
TACCCCAAGC TGGCCCAGCT GTGGTGGAAG AACGTGGCCC AGGCCGTCAC CGGCGAGAAG
ACGCCCCAGG GCGCCATGGA CAACCTGGCC GAGGAAATGG ACCAGGTCAT GTCCCGCCTG
CAGCGTGCCG GCATGGCGCA CTGCGCGCCC AAGCTCAACC CCAAGGGCGA CCCGGCCAAG
TGGCTCAGCG ACAAGCAGGC GCCATGGAAG AAGCTGGCCA ATGAAAAGCC CAAGGGCGAG
ACGATTGCGT ATGACACGCT GCTCAATGCC TGGAAAAACG GCAAGGTGCG TTAG
 
Protein sequence
MKQRLHTIAL AAALLAAGQA SWAGEAEAKK WIDAEFQPST LSKDQQMAEM KWFIEAAKKL 
QAKGVKEIAV VSETITTHEY ESKTLAKAFT EITGITVKHD LIQEGDVVEK LQTSMQSGKS
IYDGWISDSD LIGTHYRYGR IMSLTDYMAG AGKDFTNPGL DIKDFIGTSF TTAPDGKLYQ
LPDQQFANLY WFRADLFERK DLKDKFKAKY GYELGVPLNW SAYEDIAEFF TNDVKQIDGK
PIYGHMDYGK KDPSLGWRFT DAWLSMAGAA DKGIPNGMPV DEWGIRVADD KCTPVGASVS
RGGATNSPAA VFALTKYVDW MKKYAPKEAM GMTFGESGPV PAQGHIAQQI FWYTAFTADM
TKPGLPVVNA DGTPKWRMAP GPNGPYWKDG MQNGYQDVGS WTFFKDHDAN RTAAAWLYAQ
FVTAKTTSLK KTIVGLTPIR ESDIRSKAMT DMAPKLGGLV EFYRSPARVA WTPTGNNVPD
YPKLAQLWWK NVAQAVTGEK TPQGAMDNLA EEMDQVMSRL QRAGMAHCAP KLNPKGDPAK
WLSDKQAPWK KLANEKPKGE TIAYDTLLNA WKNGKVR