Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0884 |
Symbol | |
ID | 5746438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 990694 |
End bp | 993621 |
Gene Length | 2928 bp |
Protein Length | 975 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641295964 |
Product | DNA topoisomerase III |
Protein accession | YP_001561915 |
Protein GI | 160896333 |
COG category | [B] Chromatin structure and dynamics [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG5531] SWIB-domain-containing proteins implicated in chromatin remodeling |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.979089 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAAGA CCCTGGTGAT TGCTGAGAAG CCTTCGGTCG CGCAGGACAT CGTCCGCGCG TTGACTCCGG TGGCGGGCAA ATTCGACAAG CACGATGAAT ACTTCGAGAG CGAGCACTAC GTCGTGACCA GCGCCGTGGG CCACCTGGTG GAAATCCAGG CGCCCGAGGA ATTCGACGTC AAGCGCGGCA AATGGAGTTT TGCCAATCTG CCGGTGATTC CGCCGTATTT CGACCTCAAG CCCGTGGACA AGACCAAGAG CCGGCTCAAT GCCGTGGTCA AGCTGGCCAA GCGCAAGGAT GTCACCGAAC TCATCAACGC CTGCGACGCG GGCCGCGAGG GTGAGCTGAT CTTCCGCCTG ATCGAGCAGT ACGCCGCAGG CGCCAAGCCC GATGGCAAGG GCCTGGGCAA GCCGGTCAAA CGCCTGTGGC TGCAGTCCAT GACGCCGCAG GCCATCCGCG ACGGCTTCCA GAACCTGCGC AGCGACGCGC AGATGCTGGG CCTGGCCAGC GCCGCGCGCA GCCGCTCCGA GGCCGACTGG CTGGTGGGCA TCAACGGCAC GCGCGCCATG ACGGCCTTCA ATTCGCGCGA TGGCGGCTTC TTCCTGACCA CCGTGGGCCG CGTGCAGACG CCCACGCTGT CCCTGGTGGT GGAGCGCGAG GAAAAGATCC GCAAGTTCGT GAGCCGCGAC TACTGGGAAG TGCATGCCGC CTTCGATGCG CAGGCCGGCC AGTACCTGGG CAAGTGGTTC GACACGCAAT GGAAGAAGAG CGAGGATGCG GAAGCCCGCG CCGACCGCAT CTGGAACCAG CGCGACGCCC AGGCCATTGC CGACGCCGTG CGCGGCAAGC CAGCCCAGGT CACCGAGGAG TCCAAGCCTA CGTCCCAGGC CAGCCCGCTG CTGTTCGACC TGACCAGCCT GCAGCGCGAG GCCAACGGCA AGTTCGGCTT CTCGGCCAAG ACCACGCTGT CGCTGGCGCA AAGCCTGTAC GAGCGCCACA AGGCCCTGAC CTACCCGCGT ACCGACTCGC GTGCCCTGCC CGAGGACTAC GTGCCCGTGG CGCACCAGAC CTTCGCCATG CTGGCCGGCA GCGGCATGCG CCACCTGGCG CCCTTTGCCC AGCAGGCGCT GGACGAGAAC TACGTGCGCC CGACTAAGCG TATCTTCGAC AACAGCAAGG TGTCGGATCA CTTTGCCATC ATCCCGACCA CGCAGGCGCC CAGCGGCCTG TCCGAGGCCG AGCAAAAGCT CTATGACCTC GTCGTGCGCC GCTTCATGGC CGTGTTCTTC CCCAGCGCCG AGCACCAGGT GACCACGCGC ATCAGCAAGG TCGAGCAGCA CAGCTTCAAG ACCGAGGGCA AGATCCTGGT CAAGCCCGGT TGGCTGGCCA TCTACGGCAA GGAGGCCGCC AACGAGGTGG AAGGCGGCAA GGACGGCGAC AAGGGCCAGC CCCTGGTCGC GGTGCAGCCC GGCGAGCAGC CGCGCGCCGG CCAGGTCGAT CCCAAGGGCC TCAAGACCAA GCCGCCCGCG CGCTACTCCG AAGCCACGCT GCTGGGCGCC ATGGAAAGCG CCGGCAAGCA GGTCGAGGAC GACGAGCTGC GCGAGGCCAT GCAGGAAAAG GGCCTGGGCA CGCCTGCCAC GCGCGCGGCC ATCATCGAAG GCCTGCTGAC CGAAAAGTAC ATGCTGCGCG AAGGCCGCGA GCTGATTCCC ACGGCCAAGG CCTTCCAGCT CATGACCTTG CTGCGCGGCC TGGGCGTGGA AGAACTCTCG CGCGCCGACC TCACCGGCGA ATGGGAGTAC AAGCTGGCGC AGATGGAAAA GGGCCAGCTC TCGCGCGATG CCTTCATGCA GCAGATCCAG GCCATGACGG AAAAGCTGGT CAAGAAGGCC AAGGAATACG ACCGCGACAC CGTGCCCGGC GACTACGCCA CCCTGTCCAC GCCTTGCCCC AACTGCGGCG GCGTGGTCAA GGAGAACTAC CGCCGCTACG GCTGCACGGG CAGCGACGGA CAGGGCGCGG GCTGCGGCTT CTCGTTCACC AAGTCGCCTG CAGGCCGCAC CTTCGAGACG GCCGAGGCCG AGCAACTGCT GCGCGACCGC CGCCTGGGTC CGCTGGACGG CTTTCGCTCC AAGGCAGGCT GGCCCTTCGT GGCCGAGGTC ACCATCGTGC ACGATGAGGA AGGCGGCAAC TACAAGCTCG AGTTCGACTT TGGCGACGAT GCCGCCTCCG AAGACACGGG CGAGCTGGTG GACTTTGCCA GCCAGCAATC GCTGGGGCCC TGCCCCAAGT GCGGCGCGCC GGTCTTCGAA CACGGCAGCA ACTACGTCTG CGCCAAGGCC GTGCCCACGC TGGCCCAGGC CACGCCCAGC TGCGACTTCA AGAGCGGCCA GATCATCCTG CAGCAGCCCA TAGAGCGCGA GCAGATGCAA AAGCTGCTGC AGACCGGCAA GACCGACCTG CTGGACAAGT TCGTCTCCAA CCGCACGCGC CGCAGCTTCA AGGCCTTCCT GGTCTGGGAT GGCGCGGCCG GCAAGGTCAA CTTCGAGTTC GAGCAGCGCG ACAGCAAGTA CCCGCCGCGC AAGACGGCGG CCGCCAAGAG CGCGCCGGCC AAGAAGGCGC CTGCCAAGAA AGCCGCGGCC AAGACCACGG CAAAGACGGC CACCAAGACC GCCACCAAGA CCGCGCGCAA GCCGGCTGCC GGCACGCTGC AGCCCAGCGC GGCCCTGGCC GCCGTCATCG GCGAAGGCAC GGTGGCGCGT ACCGAAGTGG TCAAGAAGCT GTGGGAATAC GTCAAGGCCC AGAACCTGCA GGACCCCAAG GACAAGCGCG TCATCCGCGC CGATGACAAG CTGCGGCCCG TCTTCGGCAA GGACAGCGTG AACATGTTCG AGCTGGCCGG CATCGTGGGG AAACATCTCA CCCCCTGA
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Protein sequence | MTKTLVIAEK PSVAQDIVRA LTPVAGKFDK HDEYFESEHY VVTSAVGHLV EIQAPEEFDV KRGKWSFANL PVIPPYFDLK PVDKTKSRLN AVVKLAKRKD VTELINACDA GREGELIFRL IEQYAAGAKP DGKGLGKPVK RLWLQSMTPQ AIRDGFQNLR SDAQMLGLAS AARSRSEADW LVGINGTRAM TAFNSRDGGF FLTTVGRVQT PTLSLVVERE EKIRKFVSRD YWEVHAAFDA QAGQYLGKWF DTQWKKSEDA EARADRIWNQ RDAQAIADAV RGKPAQVTEE SKPTSQASPL LFDLTSLQRE ANGKFGFSAK TTLSLAQSLY ERHKALTYPR TDSRALPEDY VPVAHQTFAM LAGSGMRHLA PFAQQALDEN YVRPTKRIFD NSKVSDHFAI IPTTQAPSGL SEAEQKLYDL VVRRFMAVFF PSAEHQVTTR ISKVEQHSFK TEGKILVKPG WLAIYGKEAA NEVEGGKDGD KGQPLVAVQP GEQPRAGQVD PKGLKTKPPA RYSEATLLGA MESAGKQVED DELREAMQEK GLGTPATRAA IIEGLLTEKY MLREGRELIP TAKAFQLMTL LRGLGVEELS RADLTGEWEY KLAQMEKGQL SRDAFMQQIQ AMTEKLVKKA KEYDRDTVPG DYATLSTPCP NCGGVVKENY RRYGCTGSDG QGAGCGFSFT KSPAGRTFET AEAEQLLRDR RLGPLDGFRS KAGWPFVAEV TIVHDEEGGN YKLEFDFGDD AASEDTGELV DFASQQSLGP CPKCGAPVFE HGSNYVCAKA VPTLAQATPS CDFKSGQIIL QQPIEREQMQ KLLQTGKTDL LDKFVSNRTR RSFKAFLVWD GAAGKVNFEF EQRDSKYPPR KTAAAKSAPA KKAPAKKAAA KTTAKTATKT ATKTARKPAA GTLQPSAALA AVIGEGTVAR TEVVKKLWEY VKAQNLQDPK DKRVIRADDK LRPVFGKDSV NMFELAGIVG KHLTP
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