| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0838 |
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| Symbol | secD |
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| ID | 5746392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 934220 |
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| End bp | 936142 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641295918 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001561869 |
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| Protein GI | 160896287 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGAT ATCCGGTCTG GAAGTACGCG ATCATCGTGA TCGCGCTGCT GGTGGGGGTG
CTCTACACCC TGCCCAATTT TTTCGGTGAG GCGCCTGCGG TGCAGGTCTC CTCGGCCAAG
GCCACCGTCA AGGTGGACAA CGCGGTGCTG CACAGGGTCG AGGAGGCCTT GAAGGCTGCC
GATGTCAAGC CCGATGTGCT GACCATCGAG GGCACCTCGG TGCGGGCGCG CTTCAACACG
CCCGACGAGC AGCTCAAGGC CAAGGACGTG ATCCAGAAGG CCCTGATCCC CGATGCCAAC
GACCCGGCCT ACATCGTGGC GCTGAACCTG GTGTCGCGCT CGCCGCAATG GCTCACGGCC
GTCGGCGCCA AGCCCATGTA CCTGGGCCTG GACCTTCGCG GTGGCGTGCA CTTCATGCTG
CAGGTGGACA TGGCTGCGGC CCTGACCAAG AAGGCCGACT CCTTTGCCGG CGACCTGCGC
ACCTCGCTGC GCGACAAGAA CATCCGCCAC GGCGGCGTCT CGCGCAACGG CAACACCGTC
GAGATCCGCG TGCGCGACGA GGCCATGCTC ACGGCCGCCC GCAATCTGGT CACCGACCAG
TTCCCCGATC TGGCGGCCAC CTCCGAGCCT GATGGCGCCG GCTTCAAGCT GCTGGCCTCC
ATCAAGCCCG AAGCCCTGCG CAAGGTGCAG GAGCAGGCGC TCAAGCAGAA CATCGTCACC
CTGCACAACC GTATCAACGA GCTGGGCGTG GCCGAGCCCG TGATCCAGCA GCAGGGTCTG
GACCGCATCA TCGTCCAGCT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG
GGCCGCACGG CCACGCTGGA AGTGCGCCTG GTCGACGAAT CCTCCGAGGC GCGCGGCGCC
GAGCTGGGCT CGGGCCCCGT GCCATTCGGC TCCGAGCGCT ACCTGGACCG CAACGCCCAG
GCCGTGATCG TGCAAAAGCA GGTCGTGCTG ACCGGCGAGA ACCTTACCGA CGCACAGCCC
GGCTTCGACA GCCAGACCCA GGAACCCACG GTCAACCTGG TGCTCGATGC CAAGGGCGCG
CGCATCTTCA AGGACATCAC GCGTGAGAAC GTGGGCAAGC GCATGGCCAT CATCCTGTTC
GAAAAGGGCA AGGGCGAGGT CGTGACGGCT CCCGTGATCC GTACCGAGAT CGGTGGCGGA
CGCGTGCAGA TCTCGGGCCG CATGACCACG GCAGAAGCCA ACGACACGGC CCTGCTGCTG
CGTGCCGGCT CGCTGGCCGC GCCCATGGAG ATCATCGAGG AATACACCAT CGGCCCCAGC
CTGGGCGCCG ACAACATCAA CCGCGGCATC CACTCCGTGG TCTGGGGCCT GGTGGCCATC
GCGGCCTTCA TGTGCGTGTA CTACATGCTG TTCGGCGTGA TCTCCACGGT GGCCCTGTCG
GTCAACGTGC TGCTGCTGCT GGCCATCCTG TCCATGCTGC AGGCCACGCT GACCCTGCCC
GGCATCGCCG CCATGGCGCT GGCGCTGGGC GTGGCCATCG ACTCCAACGT GCTGATCAAC
GAGCGCATCC GCGAGGAACT GCGCGGCGGC GTCTCGCCGC AGGCCGCCAT CCATGCGGGC
TACGAGAACG CATGGCACAC CATCCTGGAC TCGAACGTGA CCACGCTGAT CGCGGGCCTG
GCGCTGCTGG CCTTCGGCTC CGGCCCGGTG CGCGGCTTCG CCGTGGTGCA CTGCATCGGC
ATCCTGACCA GCATGTTCTC GGCCGTGTTC TTCTCGCGCG GCCTGGTCAA CCTCTGGTAC
GGCCGCCGCA AGAAGCTCAA GAGCATCTCC ATCGGCCAGG TCTGGAAGCC GGAAGACACC
AGCCAGTTGC GCTCGGTGAC GGCCAAGGGT TCCAGCGTCG CCGATTCCGG CGCCAACAAC
TGA
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| Protein sequence | MNRYPVWKYA IIVIALLVGV LYTLPNFFGE APAVQVSSAK ATVKVDNAVL HRVEEALKAA
DVKPDVLTIE GTSVRARFNT PDEQLKAKDV IQKALIPDAN DPAYIVALNL VSRSPQWLTA
VGAKPMYLGL DLRGGVHFML QVDMAAALTK KADSFAGDLR TSLRDKNIRH GGVSRNGNTV
EIRVRDEAML TAARNLVTDQ FPDLAATSEP DGAGFKLLAS IKPEALRKVQ EQALKQNIVT
LHNRINELGV AEPVIQQQGL DRIIVQLPGV QDTAKAKDIL GRTATLEVRL VDESSEARGA
ELGSGPVPFG SERYLDRNAQ AVIVQKQVVL TGENLTDAQP GFDSQTQEPT VNLVLDAKGA
RIFKDITREN VGKRMAIILF EKGKGEVVTA PVIRTEIGGG RVQISGRMTT AEANDTALLL
RAGSLAAPME IIEEYTIGPS LGADNINRGI HSVVWGLVAI AAFMCVYYML FGVISTVALS
VNVLLLLAIL SMLQATLTLP GIAAMALALG VAIDSNVLIN ERIREELRGG VSPQAAIHAG
YENAWHTILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCIG ILTSMFSAVF FSRGLVNLWY
GRRKKLKSIS IGQVWKPEDT SQLRSVTAKG SSVADSGANN
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