Gene Daci_0674 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_0674 
Symbol 
ID5746227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp746543 
End bp748159 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content69% 
IMG OID641295753 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_001561705 
Protein GI160896123 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.354478 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGCCCG GTCTGTCGCT GCGCGTCTCC CAGCATCTTT CGCTCACTCC CCAGCTGCAG 
CAGTCGATAC AGCTGCTGCA GCTGTCCACG CTGGAGCTGG CGCAGGAAGT GGAGCAGATG
CTGGGCGACA ACCCCTTCCT GGAGCTGGCG AACGAGGAGG GCGATCACGA TGCGGCTGCC
GGCACCCGCG AGCCTGCCGC GCCCGGCGCC GAGGCCACGG AGTCCTTCCA GGAAAGCCGC
GCAGACCAGC CTTCGGCGGC GGTGGAGTGG GAGCCCTCGT CGGATGCATC CTCCGGCGAT
GCCGTGGAGA CTTCCGGCAC GGCCGAGTCC CTGAGCTGGG AAGGCGACGG CCAGACCAAC
TCGGGCAACG ATGACCGCGA CTGGGGCAGC GATGCGCCCT CCAGCCGCAC GCGCGGGCAG
GGCGAGGAAG ACGAGGCCGA TGCCACCGAA CTGGCACGCA GCGCCGAAAG CCTGACCGAC
CACCTGCACC GCCAGGCCCT GAGCCTGCGC CTGGGCGAGG TGGACCGCGC CGCACTGCGC
TTTCTGATCG AGAACCTCAA CGACGACGGC TACCTGGAAG ACCCGCTCGA CGAGCTGGCA
CAGGGCCTGG CGGGCGACGA TCTGGAGGAG TGCGAGGAAC TGGTGCACCG CTTCACCGTG
GCGCTGCGCC TGCTGCAAAG CCTGGAGCCC GTGGGCGTGG GCGCGCGCGA CCTGGCCGAA
TGCCTGACGC TGCAACTGCG CGACCAGCTG GCCGATGCCG AGCGCGAAGG CAGCGGCAGT
GCCGAGGACG AAGACCGGCA GGCCGTGCTG CGCACCGCGC TGGACATCTG CGCCCAGCCC
ATGGACCTGC TGGCGCGGCG CGACCTGCGC AAGCTCGCCA GCCTGTGCGG TGCGCGCGAG
GAGCGGCTGC GCGAGGCGCT GGTGCTGATC ACCCGGCTGG AGCCACGCCC GGGCCGGCGC
TTTGCCGACG TGCAGCGCCA GATCGTCGTG CCCGACGTCA TCGTGCGCCC CGTGCGCAGC
GGCGCGGGCC GCATGGACTT CAGCGTGCAG CTCAACCCCG ACGTCATGCC CAAGCTGCGC
GTGCACGACA TCTATGCCAG CGCGCTGCGC AGCCACAGGG GCAGCGAAGG CCATGCAGCG
CTGCAGCAGC GGCTGCAGGA GGCGCGCTGG TTCATCAAGA ACATCCAGCA GCGCTTCGAC
ACCATCCTGC GCGTGTCGCA GGCCATCGTG GAGCGCCAGA AGAACTTCTT CGTGCATGGC
GAACTGGCCA TGCGCCCGCT GGTGCTGCGC GACATTGCCG ATGCGCTGGG CCTGCATGAG
TCCACCATCA GCCGCGTGAC CACGGCCAAG TACATGGCCA CGCCGCAGGG CACCTACGAA
CTCAAGTATT TCTTCGGCTC GGGCCTGGGC ACCGAGGCCG GTGGCAATGC CTCCAGCACG
GCCGTGCGCG CGCTGATCAA GCAGTTCGTC GCGGCCGAAG ACCCCAAGAA GCCGCTGTCG
GACAACCAGC TCGCCGACAT GCTCAAGGAG CAGGGCATCG AATGCGCGCG GCGCACGGTG
GCCAAGTACC GCGAGCTGCT CAAGATCCCG CCGACCACGC TGCGCAAGGC GCTGTAG
 
Protein sequence
MKPGLSLRVS QHLSLTPQLQ QSIQLLQLST LELAQEVEQM LGDNPFLELA NEEGDHDAAA 
GTREPAAPGA EATESFQESR ADQPSAAVEW EPSSDASSGD AVETSGTAES LSWEGDGQTN
SGNDDRDWGS DAPSSRTRGQ GEEDEADATE LARSAESLTD HLHRQALSLR LGEVDRAALR
FLIENLNDDG YLEDPLDELA QGLAGDDLEE CEELVHRFTV ALRLLQSLEP VGVGARDLAE
CLTLQLRDQL ADAEREGSGS AEDEDRQAVL RTALDICAQP MDLLARRDLR KLASLCGARE
ERLREALVLI TRLEPRPGRR FADVQRQIVV PDVIVRPVRS GAGRMDFSVQ LNPDVMPKLR
VHDIYASALR SHRGSEGHAA LQQRLQEARW FIKNIQQRFD TILRVSQAIV ERQKNFFVHG
ELAMRPLVLR DIADALGLHE STISRVTTAK YMATPQGTYE LKYFFGSGLG TEAGGNASST
AVRALIKQFV AAEDPKKPLS DNQLADMLKE QGIECARRTV AKYRELLKIP PTTLRKAL