Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0674 |
Symbol | |
ID | 5746227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 746543 |
End bp | 748159 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641295753 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_001561705 |
Protein GI | 160896123 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.354478 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAGCCCG GTCTGTCGCT GCGCGTCTCC CAGCATCTTT CGCTCACTCC CCAGCTGCAG CAGTCGATAC AGCTGCTGCA GCTGTCCACG CTGGAGCTGG CGCAGGAAGT GGAGCAGATG CTGGGCGACA ACCCCTTCCT GGAGCTGGCG AACGAGGAGG GCGATCACGA TGCGGCTGCC GGCACCCGCG AGCCTGCCGC GCCCGGCGCC GAGGCCACGG AGTCCTTCCA GGAAAGCCGC GCAGACCAGC CTTCGGCGGC GGTGGAGTGG GAGCCCTCGT CGGATGCATC CTCCGGCGAT GCCGTGGAGA CTTCCGGCAC GGCCGAGTCC CTGAGCTGGG AAGGCGACGG CCAGACCAAC TCGGGCAACG ATGACCGCGA CTGGGGCAGC GATGCGCCCT CCAGCCGCAC GCGCGGGCAG GGCGAGGAAG ACGAGGCCGA TGCCACCGAA CTGGCACGCA GCGCCGAAAG CCTGACCGAC CACCTGCACC GCCAGGCCCT GAGCCTGCGC CTGGGCGAGG TGGACCGCGC CGCACTGCGC TTTCTGATCG AGAACCTCAA CGACGACGGC TACCTGGAAG ACCCGCTCGA CGAGCTGGCA CAGGGCCTGG CGGGCGACGA TCTGGAGGAG TGCGAGGAAC TGGTGCACCG CTTCACCGTG GCGCTGCGCC TGCTGCAAAG CCTGGAGCCC GTGGGCGTGG GCGCGCGCGA CCTGGCCGAA TGCCTGACGC TGCAACTGCG CGACCAGCTG GCCGATGCCG AGCGCGAAGG CAGCGGCAGT GCCGAGGACG AAGACCGGCA GGCCGTGCTG CGCACCGCGC TGGACATCTG CGCCCAGCCC ATGGACCTGC TGGCGCGGCG CGACCTGCGC AAGCTCGCCA GCCTGTGCGG TGCGCGCGAG GAGCGGCTGC GCGAGGCGCT GGTGCTGATC ACCCGGCTGG AGCCACGCCC GGGCCGGCGC TTTGCCGACG TGCAGCGCCA GATCGTCGTG CCCGACGTCA TCGTGCGCCC CGTGCGCAGC GGCGCGGGCC GCATGGACTT CAGCGTGCAG CTCAACCCCG ACGTCATGCC CAAGCTGCGC GTGCACGACA TCTATGCCAG CGCGCTGCGC AGCCACAGGG GCAGCGAAGG CCATGCAGCG CTGCAGCAGC GGCTGCAGGA GGCGCGCTGG TTCATCAAGA ACATCCAGCA GCGCTTCGAC ACCATCCTGC GCGTGTCGCA GGCCATCGTG GAGCGCCAGA AGAACTTCTT CGTGCATGGC GAACTGGCCA TGCGCCCGCT GGTGCTGCGC GACATTGCCG ATGCGCTGGG CCTGCATGAG TCCACCATCA GCCGCGTGAC CACGGCCAAG TACATGGCCA CGCCGCAGGG CACCTACGAA CTCAAGTATT TCTTCGGCTC GGGCCTGGGC ACCGAGGCCG GTGGCAATGC CTCCAGCACG GCCGTGCGCG CGCTGATCAA GCAGTTCGTC GCGGCCGAAG ACCCCAAGAA GCCGCTGTCG GACAACCAGC TCGCCGACAT GCTCAAGGAG CAGGGCATCG AATGCGCGCG GCGCACGGTG GCCAAGTACC GCGAGCTGCT CAAGATCCCG CCGACCACGC TGCGCAAGGC GCTGTAG
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Protein sequence | MKPGLSLRVS QHLSLTPQLQ QSIQLLQLST LELAQEVEQM LGDNPFLELA NEEGDHDAAA GTREPAAPGA EATESFQESR ADQPSAAVEW EPSSDASSGD AVETSGTAES LSWEGDGQTN SGNDDRDWGS DAPSSRTRGQ GEEDEADATE LARSAESLTD HLHRQALSLR LGEVDRAALR FLIENLNDDG YLEDPLDELA QGLAGDDLEE CEELVHRFTV ALRLLQSLEP VGVGARDLAE CLTLQLRDQL ADAEREGSGS AEDEDRQAVL RTALDICAQP MDLLARRDLR KLASLCGARE ERLREALVLI TRLEPRPGRR FADVQRQIVV PDVIVRPVRS GAGRMDFSVQ LNPDVMPKLR VHDIYASALR SHRGSEGHAA LQQRLQEARW FIKNIQQRFD TILRVSQAIV ERQKNFFVHG ELAMRPLVLR DIADALGLHE STISRVTTAK YMATPQGTYE LKYFFGSGLG TEAGGNASST AVRALIKQFV AAEDPKKPLS DNQLADMLKE QGIECARRTV AKYRELLKIP PTTLRKAL
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