| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0515 |
|---|
| Symbol | |
|---|
| ID | 5746057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 550659 |
|---|
| End bp | 553001 |
|---|
| Gene Length | 2343 bp |
|---|
| Protein Length | 780 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641295583 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001561546 |
|---|
| Protein GI | 160895964 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.168108 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGGG CCTCGGCCGA CGACGAACGC GTGGCCCTGC CGGCCTCGGC CGGCCTGTCG
CGCGGCACGC GCTGGGCCGT GGGCGTGGGC GCCGGCCTCA TGGGCCTGGT CGGGGTGCTG
CTGCTGTTCC TGCTCACCCT GGCCACCAAC AACCGCCTGG ACTACGAGCG CAACTACAAC
TGGCTGTTCG CCGCCAACGT GGTCGTGGCC GGCCTGCTGC TGGCCATCCT GGCCTGGGGC
GGCATCCGCC TGGCCATCCG GCTGCAGCGC GGGCGCTTCG GCAGCCGCCT GCTGCTCAAG
CTGGCCGGCA TCTTCACGCT GGTGGGCCTG GTGCCGGGCC TGCTGATCTA CATCGTCTCC
TACCAGTTCG TCTCGCGCTC CATCGAAAGC TGGTTCGATG TGCAGGTCGA GGGCGCGCTG
TCGGCCGGCG TGAGCCTGGC CAGTGCCACG CTGGAGACCG TGGCCAATGA CATGGCCAAC
AACACGCGCA CCGCAGGCGC CCAGCTGTCC CAGGTCTCCG ATGCCGGCGC AGCGCTGATC
CTGGAGCGCG TGCGCGACCA GTTGGGTGCC ACCGATGTCG TGCTGTGGAG TGCATCGGAG
CTTGCCGTCA TGGGCCCGAC GCAGACCACC CGCAGCGGTG ACCTTGCGGG CCTGCGCGCC
ATCGCCAGCG TGGGCCAGTC GCGCTTCAAC CTGCAGCCCG AACGCCCCAG CGCGCAAATG
CTGCGCTCGC TGCGCGAGCA GCGCGCCGTG GCCAGCATCG AAGGCCTGGA CGACGACGGC
ATGGCCCAGC CCGGCGCCAC CGCGCCCGGG GCCCAGGTCC GCACCCTGGC CCTGGTGCCC
AACCCGAGCG TGGGCCTGCT GACCGAGCCG CGCTACCTGC AGGCCACCAT TGCACTGCCG
CAGGCCCTGG TGACCAATGC CCTGGCCGTG CAGGCAGCCA ACCGCGAATA CCAGGAGCGC
GCGCTGGCAC GCGGTGGCCT GCAGCGCATG TACATAGGCA CGCTCACGCT CAGCCTGTTC
CTGGCCGTCT TCGGCGCCGT GGTGCTGGCC ATCGTGCTGG GCAACCAGCT GGCCCGGCCG
CTGCTGCTGC TGGCCCAGGG CATGCGCGAC GTGGCGCGCG GCGACCTGCG GCCCAAGCCG
GCGCTGCAGA CGCGCGACGA GATCGGCGGG CTCACGCGCT CCTTTGCGCT CATGACCCAG
CAACTGGCCG ACGCCCGCGC CGAAGCCAAC CGCAGCATGG GCCAGCTCGA TGCCGCACGC
GGCAACCTGC AGACCATCCT CGACAACCTC ACCTCGGGCG TCATCGTGCT GGACGCGCGG
GGCGCCATCG TGCTGAGCAA TCCCGGCGCC ACGCGCATAT TGCGCGCGCC CATGGCCGTC
CATGAAGGCC GGCTGCTGTC CCAGGTGCCG GGGCTGGAGC AGTTCGGCGA AGTCGTGCAG
GAGCAGTTCG CGCTCTTCCT GGGCGAGCAG GGGCGCGATC GCTGGCAACT GGTGCATGAG
CTGCATGCCT CCACCGATGG CGGCGTCATC CAGCACACCA CCACCCTGGT CATGCGCGGT
GCGGAACTGC CCGATGCGCA GCGCCTGCTG GTCTTCGACG ACATCTCGGA AATCGTCTCG
GCCCAGCGTG CCCAGGCCTG GGGCGAGGTG GCGCGCCGCG TGGCCCACGA GATCAAGAAC
CCGCTCACGC CCATCCAGCT GTCGGCCGAG CGCATGGCCA TGCGGCTGAC CGACAAGCTG
CAGCCAGCAG AGCAGGCGCT GCTGGCCAAG TCCGTCAAGA CCATCGTCGA TCAGGTCGGC
GCCATGAAGC GCCTGGTCGA TGAATTCCGC GACTACGCGC GCCTTCCCGC CGCCAACCTG
CAGTCGCTGG ACCTCAACGC GCTGGTCACC GATGTGCTCC AGCTGTATGG GGAAGAGAAC
GCCGAAGTGC GCGTGGACTG CGTGCTGGAC CCGCAATGCC CGCCGATTTC CGGCGATGGC
CAGCAGCTGC GCCAGGTCAT TCACAATCTT TTGCAGAATG CCCAGGACGC CACGGCCCAG
CGCGCGCAGG AAAGCGGCCA GCCCCCCGGC CCCGTGACCA TAGAGACGCG CTGGAACGAG
TCCGCGCGCC GCGTGCGCCT GAGCATCAGT GACAGCGGCA CGGGCTTCGC CGCCAACATC
CTTCAACGGG CCTTCGAGCC CTACGTCACG ACCAAGGTGC GAGGCACCGG CCTGGGCCTG
GCCGTGGTCA AGAAAATCGC AGACGAGCAT GGCGCCCGCA TCGACCTGGG CAACAGGGAA
GACGACGGGG TGATTCAAGG TGCGCAAGTG TCGCTATCAT TTGCGCCTGA GCGTACGGGA
TAG
|
|---|
| Protein sequence | MSRASADDER VALPASAGLS RGTRWAVGVG AGLMGLVGVL LLFLLTLATN NRLDYERNYN
WLFAANVVVA GLLLAILAWG GIRLAIRLQR GRFGSRLLLK LAGIFTLVGL VPGLLIYIVS
YQFVSRSIES WFDVQVEGAL SAGVSLASAT LETVANDMAN NTRTAGAQLS QVSDAGAALI
LERVRDQLGA TDVVLWSASE LAVMGPTQTT RSGDLAGLRA IASVGQSRFN LQPERPSAQM
LRSLREQRAV ASIEGLDDDG MAQPGATAPG AQVRTLALVP NPSVGLLTEP RYLQATIALP
QALVTNALAV QAANREYQER ALARGGLQRM YIGTLTLSLF LAVFGAVVLA IVLGNQLARP
LLLLAQGMRD VARGDLRPKP ALQTRDEIGG LTRSFALMTQ QLADARAEAN RSMGQLDAAR
GNLQTILDNL TSGVIVLDAR GAIVLSNPGA TRILRAPMAV HEGRLLSQVP GLEQFGEVVQ
EQFALFLGEQ GRDRWQLVHE LHASTDGGVI QHTTTLVMRG AELPDAQRLL VFDDISEIVS
AQRAQAWGEV ARRVAHEIKN PLTPIQLSAE RMAMRLTDKL QPAEQALLAK SVKTIVDQVG
AMKRLVDEFR DYARLPAANL QSLDLNALVT DVLQLYGEEN AEVRVDCVLD PQCPPISGDG
QQLRQVIHNL LQNAQDATAQ RAQESGQPPG PVTIETRWNE SARRVRLSIS DSGTGFAANI
LQRAFEPYVT TKVRGTGLGL AVVKKIADEH GARIDLGNRE DDGVIQGAQV SLSFAPERTG
|
|---|
| |