| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0473 |
|---|
| Symbol | |
|---|
| ID | 5746010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 501982 |
|---|
| End bp | 505152 |
|---|
| Gene Length | 3171 bp |
|---|
| Protein Length | 1056 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641295536 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001561504 |
|---|
| Protein GI | 160895922 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.39068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCA AGCTGATCCG CTGGTCCATC GCCAACCGCT TCCTCGTGCT GCTGGCCACC
GTGGCGCTCA GCGCCTGGGG CATCTATGCG GTGCAACGCA CACCGCTGGA TGCGCTGCCC
GACCTGTCGG ACGTGCAGGT CATCATCCGC ACCACCTATC CGGGTCAGGC GCCGCGCATC
GTCGAGAACC AGGTCACGTA CCCGCTGACC ACGACGATGC TTTCGGTGCC GGGGGCCAAG
GCGGTGCGCG GCTACTCGTT CTTTGGCGAC TCCTTTGTCT ACGTGCTGTT CGAGGACGGA
ACCGACCCAT ACTGGGCGCG CTCCCGGGTG CTCGAATACC TGAACCAGGT GCAGTCGAGA
TTGCCCGCCC AGGCCAAAGC CTCATTGGGT CCAGACGCGA CCGGCGTCGG TTGGATCTAC
GAGTATGCGT TGATCGACCG CAGCGGCAAG ATGGACATCT CGCAACTGCG CGCGCTGCAG
GACTGGTTTC TCAAGTACGA GCTGAAGACC GTGCCCGACG TGGCCGAGGT CGCTTCCGTG
GGCGGCATGG TGCGCCAGTA CCAGATCGTG CTCGATCCGG ACAAGCTTGC GGCCTACGGC
ATCCCGCACA CCAAGGTCGT GGAGGCGATC CAGCGCGCGA ACCAGGAGAC GGGCGGCTCG
GTGCTCGAAC TCGGCGAGGC CGAGTACATG GTGCGCGCCT CGGGCTACCT GGGGAGCCTG
GAAGATTTTA GGAAGGTGCC GCTCATGACG ACAGCCGCCG GCGTGTCGGT GCGTCTGGGC
GACGTAGCGC GGGTGCAGAT CGGTCCGGAA ATGCGGCGCG GCATCGGCGA ACTCAACGGC
GAGGGAGAGG CCGTCGGCGG CGTGATCGTG ATGCGCTCGG GAAAGAACGC GCTGCAGACC
ATTGCTGCGG TCAAGGGCAA GCTCCAGGGC CTGGCGTCCA GCCTGCCGCG AGGTGTGGAG
ATCGTGCCGG TCTACGACCG CTCGGGGCTG ATCGAACGCG CAGTGGAGAA CCTCACGCAC
AAGCTGATTG AGGAATTCAT CGTCGTTGCG GTGGTCTGCT TCCTCTTCCT GTTCCACCTG
CGCTCGGCGC TGGTCGCCAT CATCTCGCTG CCCCTGGGCA TCCTGGCGGC GTTCATCGTG
ATGCACTACC AGGGCGTCAA CGCCAACATC ATGTCGCTGG GGGGCATCGC GATCGCCATC
GGTGCGATGG TCGACGCGGC GGTGGTGATG ATCGAGAACG CCCATAAGCA TCTGGAGCAT
TGGGGCCATG AACACCCTGG CGAGACGCTT GAAGGGACGG CCCGATGGCA CGTCATCGGC
GAATCGGCGG CGGAGGTGGG GCCGGCGCTG TTTTTCTCGC TGCTGATCAT CACGCTGTCC
TTCGTGCCTG TGTTCACACT GGAAGCGCAG GAAGGACGCC TGTTCTCCCC GCTGGCGTTC
ACCAAGACCT ACGCCATGGC GGCTGCGGCA GGCCTGTCGG TGACCCTGAT CCCGGTGCTC
ATGGGCTACC TGGTCCGTGG CCGCATCCCC GACGAGAAGA ACAATCCGCT CAATCGCCTG
CTGATCGCGG TCTACCGGCC GCTGCTCGAC AGGGTGTTGC GCGCCCCGAA GCTCACGCTC
GTGGTGGCGC TCGTGGTGCT GGCTACCAGC TTGTGGCCGC TGCGGCACAT CGGCGGCGAG
TTCATGCCGC GGCTGGACGA AGGCGACCTG CTGTACATGC CTTCGGCACT GCCAGGACTG
TCGGCAGGGA AAGCGGCCGA GTTGCTGCAG CAGACCGATC GCCTGATCAA GACGGTGCCG
GAGGTCGCGA GCGTCTACGG CAAGGCGGGC CGCGCAGAGA GCGCGACCGA CCCCGCGCCG
CTGGAGATGT TCGAGACGAC GATCCAATTC AAGCCGCGCG ACCAGTGGCG CGCCGGCATG
ACGACCGACA AGCTGGTTGA GGAACTCGAC CGCATCGTCA AGGTGCCGGG CCTGTCCAAC
ATCTGGGTGC CGCCGATCCG CAATCGCATC GACATGCTGG CCACGGGCAT CAAGAGTCCG
GTGGGTGTCA AGGTGGCGGG CACGGACCTG GCGACCATCG ACCGCCTCAC TGGCGAGATC
GAGCGCACGC TCAAGGACGT GCCGGGCGTG AGCAGCGCCC TGGCCGAGCG GCTCACCGGC
GGACGCTATG TGGATGTGAA CATCCGGCGC GACGACGCGG CGCGCTATGG GTTGAACATC
GCCGACGTGC AGTCGGTGGT TTCATCCGCC GTGGGCGGCG AGAACATCGG CGAGACGGTG
GAAGGCCTGC AGCGCTTCCC GATCAACCTG CGCTATCCGC GCGAGATGCG CGATTCGCTG
GAAAAGCTGC GCGTCCTGCC CGTGCTGACA GGAAGCGGCC AGCGGCTGGT GCTCTCCGAT
GTGGCCGACA TCCGCGTCGC CGACGGGCCG CCGATGCTGC GCAGCGAGAA CGCGCGCCTG
TCGGGCTGGG TGTATGTCGA TATCCGGGAT CGGGATCTGC GCTCCGCCGT GCAGGACATG
CAGCAGGCCG TCGAAAAGCA AGTGAAGCTG CCGCCGGGCT ACTCGATCTC CTGGTCGGGC
CAGTTCGAGT TCCTGGAGCG CGCCACCGCC AAGCTCAAGG TGGTGGTGCC ATTCACGCTG
CTCATCATCT TCGTGCTGCT GTACCTGACC TTCGGCGCGT TCGGTGAGGC GCTGCTGATC
ATGGCGGCGC TGCCGTTCGC TCTGGTGGGC GGCATCTGGC TGCTGTATCT GCTGGGCTAC
AACCTGTCGA TCGCGGGCGC CGTGGGCTTC ATCGCGCTGG CCGGCGTGTC CGCCGAATTC
GGCGTGATCA TGCTGCTGTA CCTCAAGAAC GCCTGGCAAG AGCGTGCCGA CCAGGGTAAG
ACCAGCGAGG CCGATCTGCT GGATGCCATT CGCGAAGGCG CCGTGCTGCG CGTGCGCCCC
AAGGCGATGA CGGTGGCCGT CATCCTGGCC GGCCTGCTGC CGATCATGTG GGGCACGGGA
ACAGGCTCGG AGGTGATGCA ACGCATCGCC GCGCCGATGG TGGGCGGGAT GGTCACGGCG
CCGTTGCTCT CGATGTTCGT CATTCCCGCG GCCTACCTGT TGATGCGCCG GTCGCGCGAA
CGTAAGGCAT CGCCGTGGAT GTTCTGGAGG CGTCATCGTG CGGCCGCTTG A
|
|---|
| Protein sequence | MIAKLIRWSI ANRFLVLLAT VALSAWGIYA VQRTPLDALP DLSDVQVIIR TTYPGQAPRI
VENQVTYPLT TTMLSVPGAK AVRGYSFFGD SFVYVLFEDG TDPYWARSRV LEYLNQVQSR
LPAQAKASLG PDATGVGWIY EYALIDRSGK MDISQLRALQ DWFLKYELKT VPDVAEVASV
GGMVRQYQIV LDPDKLAAYG IPHTKVVEAI QRANQETGGS VLELGEAEYM VRASGYLGSL
EDFRKVPLMT TAAGVSVRLG DVARVQIGPE MRRGIGELNG EGEAVGGVIV MRSGKNALQT
IAAVKGKLQG LASSLPRGVE IVPVYDRSGL IERAVENLTH KLIEEFIVVA VVCFLFLFHL
RSALVAIISL PLGILAAFIV MHYQGVNANI MSLGGIAIAI GAMVDAAVVM IENAHKHLEH
WGHEHPGETL EGTARWHVIG ESAAEVGPAL FFSLLIITLS FVPVFTLEAQ EGRLFSPLAF
TKTYAMAAAA GLSVTLIPVL MGYLVRGRIP DEKNNPLNRL LIAVYRPLLD RVLRAPKLTL
VVALVVLATS LWPLRHIGGE FMPRLDEGDL LYMPSALPGL SAGKAAELLQ QTDRLIKTVP
EVASVYGKAG RAESATDPAP LEMFETTIQF KPRDQWRAGM TTDKLVEELD RIVKVPGLSN
IWVPPIRNRI DMLATGIKSP VGVKVAGTDL ATIDRLTGEI ERTLKDVPGV SSALAERLTG
GRYVDVNIRR DDAARYGLNI ADVQSVVSSA VGGENIGETV EGLQRFPINL RYPREMRDSL
EKLRVLPVLT GSGQRLVLSD VADIRVADGP PMLRSENARL SGWVYVDIRD RDLRSAVQDM
QQAVEKQVKL PPGYSISWSG QFEFLERATA KLKVVVPFTL LIIFVLLYLT FGAFGEALLI
MAALPFALVG GIWLLYLLGY NLSIAGAVGF IALAGVSAEF GVIMLLYLKN AWQERADQGK
TSEADLLDAI REGAVLRVRP KAMTVAVILA GLLPIMWGTG TGSEVMQRIA APMVGGMVTA
PLLSMFVIPA AYLLMRRSRE RKASPWMFWR RHRAAA
|
|---|
| |