| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0397 |
|---|
| Symbol | rpsC |
|---|
| ID | 5745934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 436967 |
|---|
| End bp | 437839 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641295460 |
|---|
| Product | 30S ribosomal protein S3 |
|---|
| Protein accession | YP_001561428 |
|---|
| Protein GI | 160895846 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0092] Ribosomal protein S3 |
|---|
| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.26331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAGA AAATCCATCC TACCGGCTTC CGCCTGGCTG TTAGCCGCAA CTGGGCCAGC
CGTTGGTACG CAAGCAACCG TGACTTCGCC GGCATGCTGG CCGAAGACAT CAAGGTGCGC
GAGTTCCTGA AGGCCAAGCT GAAGAATGCC GCCGTGTCGC GCATCCTGAT CGAGCGTCCT
GCAAAGAACG CCCGCATCAC GATCTTCTCG GCACGTCCTG GTGTCGTGAT CGGCAAGAAG
GGCGAGGACA TCGAGAACCT GAAGAAGGAA CTCGCAACCC GTCTGGGCGT GCCCGTGGCT
GTGAACATCG AAGAAGTGCG CAAGCCTGAA ATCGATGCCA AGCTGATCGC CGATTCGATC
TGCCAGCAGC TCGAAAAGCG CATCATGTTC CGCCGCGCCA TGAAGCGTGC AATGCAAAAC
GCCATGCGTC TGGGTGCCCA AGGCATCAAG ATCATGTCTT CGGGCCGTCT GAACGGTATC
GAAATTGCAC GTTGCGAGTG GTATCGCGAA GGCCGTGTGC CACTTCACAC ACTGCGCGCC
GACATCGACT ATGGCTTCTC CGAAGCCAAG ACGACCTACG GCGTGATCGG TGTGAAGGTC
TGGGTCTACA AGGGTGACAC GCTGGGTCGT AACGACCTGC CGGCAGCCGA GACCCCCCGC
CCCGAAGAAG AACGTCGTCC TCGCGGCCCC CGCCGTGATG GTCGCGGCGA TGGTCGTCGT
GACGGTGCTG GCCGTGGTGC CCGCCGCCCC GCAGGCGCTA ACGCAGCACC TGCTGACGGC
AGCGATAAGC CCGCCGGCGC TGGCGCTGAT TCCGTTAAGC GCGTTCGCAA GACTGACGCG
CCCGCTACAG CAGCGGACGG TAAAGGAGAA TAA
|
|---|
| Protein sequence | MGQKIHPTGF RLAVSRNWAS RWYASNRDFA GMLAEDIKVR EFLKAKLKNA AVSRILIERP
AKNARITIFS ARPGVVIGKK GEDIENLKKE LATRLGVPVA VNIEEVRKPE IDAKLIADSI
CQQLEKRIMF RRAMKRAMQN AMRLGAQGIK IMSSGRLNGI EIARCEWYRE GRVPLHTLRA
DIDYGFSEAK TTYGVIGVKV WVYKGDTLGR NDLPAAETPR PEEERRPRGP RRDGRGDGRR
DGAGRGARRP AGANAAPADG SDKPAGAGAD SVKRVRKTDA PATAADGKGE
|
|---|
| |