Gene Daci_0251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_0251 
Symbol 
ID5745787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp282701 
End bp283612 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content66% 
IMG OID641295313 
Product5-dehydro-4-deoxyglucarate dehydratase 
Protein accessionYP_001561282 
Protein GI160895700 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCCC AAGACCTCAA AGACGTGATG AGTTCCGGCC TGCTGTCCTT CCCCGTGACG 
GACTTCGACA GCAACGGCAA CTTCAATGCC AAGGGCTATG CGGCCCGCCT CGAATGGCTG
GCCCCCTACG GCGCCAGCGC GCTGTTCGCG GCAGGCGGCA CGGGCGAGTA CTTCTCGCTG
TACGGCGAGG AATACGGCCA GATCATCAAG ACCGCCGTGG ACACCTGCCG CGGCAAGGTG
CCCATCATCG CGGGCGCCGG CGGCCCCACG CGCACGGCGA TTGCCCATGC CCAGGAAGCG
GAGCGCCTGG GCGCCCACGG CGTCCTGCTG CTGCCCCACT ACCTGACCGA AGCCGGCCAG
GAAGGCCTGA TCGCCCATGT GGAGCAGGTC TGCAAGAGCG TGAAGTTCGG CGTCATCGTC
TACAACCGCG ACCGCACCCG CTTCACGCCC GAATCGCTGG CCATCCTGGC CGAGCGCTGC
CCCAACCTGG TGGGCTTCAA GGACGGCATG GGCAACATCG AGACCATGTC CGCCATCTTC
ATGAAGATGG GCGACCGCTT CGCCTACCTG GGCGGCCTGC CCACGGCCGA GGTCTATGCG
GCCGCCTACA AGGCCCTGGG CACGCCGGTG TACTCCTCGG CCGTCTTCAA CTTCATCCCC
AAGACGGCGA TGGCGTTCTA CGAAGCCGTG CGCACCGACG ACATGGCCAC GCAGCACAAG
CTGCTCAAGG AATTCTTCAT GCCCTACCTG AAGATCCGCA ACCGCGTCGA AGGCTACGGC
GTGAGCATCA TCAAGGCCGG CGCCAAGCTG GTCGGCCACG ACGCAGGCCC CGTGCGCGCC
CCGCTGACGG ACCTCAAGCC CTCCGAGCTG GAAGAGCTCA AGGCCCTGAT CGACAAGCTC
GGCCCGCAAT AA
 
Protein sequence
MTPQDLKDVM SSGLLSFPVT DFDSNGNFNA KGYAARLEWL APYGASALFA AGGTGEYFSL 
YGEEYGQIIK TAVDTCRGKV PIIAGAGGPT RTAIAHAQEA ERLGAHGVLL LPHYLTEAGQ
EGLIAHVEQV CKSVKFGVIV YNRDRTRFTP ESLAILAERC PNLVGFKDGM GNIETMSAIF
MKMGDRFAYL GGLPTAEVYA AAYKALGTPV YSSAVFNFIP KTAMAFYEAV RTDDMATQHK
LLKEFFMPYL KIRNRVEGYG VSIIKAGAKL VGHDAGPVRA PLTDLKPSEL EELKALIDKL
GPQ