| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0164 |
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| Symbol | |
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| ID | 5745700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 183409 |
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| End bp | 186603 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641295226 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001561195 |
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| Protein GI | 160895613 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.780381 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTCT CCAAATTCTT CATAGACCGG CCGATCTTCG CGGTCGTGCT CTCCATCATC
CTGTTCGCCG TGGGGCTGGT CGCGATTCCG CAGCTGCCCG TGGGCGAGTA TCCCGAGGTC
GTGCCGCCCA GCGTGGTGGT GCGCGCCACC TATCCGGGCG CCAATCCCAA GGAGGTCGCC
GAGTCGGTGG CCGTGCCGCT GGAGGAGGCC ATCAACGGCG TCGAAGGCCT GATGTACATG
AAGTCGGTCG CGGCGTCCGA CGGCAGCCTG CAGGTGGTCT CCACCTTCCG CCCCGACGTC
GATCCCGACA CGGCCGCCGT GCGCGTGCAA AACCGCGTCA GCCAGGCCCA GAGCCGTCTG
CCCGAGGAGG TGCGCCAGTT CGGCGTGACC ACGCAAAAGC AGTCGTCCAC GCCGCTGATG
TACGTGGGCC TGGTGTCCCA GGATGGCCAG CATGACGCGC TGTACCTGCG CAACTACGTC
ACGCTCAAGA TCAAGGACGT GCTGGCACGC ATTCCGGGCA TTGGCGACGT GGGCATCTAC
GGCGCGGGCG ACTACGCCAT GCGCGTGTGG CTGGACCCGG ACAAGGTGGC CGCGCGCCAG
CTCACGGCGC CCGAGGTGAT TGCCGCCATC CGCGAGCAGA ACATCCAGGT CTCGGCCGGG
CAATTGGGCG CGCAGCCCAG TCCGCAGAGC GCGGACAAGC TGCTGTCCAT CAACGTGCGC
GGGCGGCTGA AGACGCCCGA GGAATTCGGC AGCATCGTGC TCAAGGGCGG TGCGGACGGC
CAGGTCGTGC GCCTGGCCGA CGTGGCCCGC ATCGAGCTGG GCGCCAGCGA CTACACGCTG
CGCTCGTGGA GCGACAAGAA GAACATGGCG GCCGTGGGCA TCTTCCTGTC GCCCGGCGCC
AATGCGCTGG GCGTGGCCGA GCAGGTCTAC GCGGCCATGG ACAAGCTCTC GCAGGACCTG
CCCGAGGGCG TGGCCTTCGA GACGGTCTGG GACCCCACGG TCTTCGTGCG CGACTCCATC
AAGGCGGTGC AGAGCACGCT GATCGAGGCC GTCATCCTCG TGGTGCTGGT GGTCATCGTC
TTCCTGCAGA CCTGGCGCGC CTCCATCATT CCGCTGCTGG CCGTGCCCGT GTCCATCGTC
GGCACCTTCG CGGGGCTGTA CCTGCTGGGC TACTCCATCA ACACGCTGAC CCTGTTCGGC
CTGGTGCTGG CCATCGGCAT CGTGGTGGAC GACGCCATCG TGGTGGTGGA GAACGTGGAG
CGCTATATCG AGGAAGGGCA CACGCCCCTG GAGGCGGCCC ACCTGGCGAT GAAGGAGGTC
TCGGGCCCCA TCATCGCCAT CGCCCTGGTG CTGTGCGCGG TCTTCGTGCC CATGGCCTTT
CTCAGCGGCG TGACGGGGCA GTTCTACAAG CAGTTCGCCG TGACGATTGC CATCTCCACG
GTGATCTCGG CCATCAACTC GCTGACGCTG TCGCCCGCGC TGGCGGCCAA GCTGCTGCAG
CCGCGCGGCG CGCCGCGCGA TCCGCTGGCG CGCGGGCTGG ACCGCAGTCT GGGCTGGCTC
TTCCGGCCCT TCAACCGCTT CTTCGACCGC AGCGCCCACG GCTACCAGAA CTCTGTGGGG
CATTCGCTGC GCCGCCGGGG CCTGGTGTTC GCGGTCTATG CGGCGCTGCT GGCGGGCACG
GCCGTGCTGT TCCAGGCCGT GCCGGGCGGC TTCATCCCGC TGCAGGACAA GCTGTACCTG
TTCGGCGGCG CCAAGCTGCC CGAGGGGGCT TCGCTGAACC GCACGGATGC GGTCACGCGC
CAGATGGTCG ATGCCGCCAA AAGCGTGGAA GGCGTGGACA TGGTCGCCGC CTTCGCGGGC
TTCAACGCGC TGCAGTCCAC GACCACGCCC AACCTGACCA GCGCCTACAT CATGCTCAAG
CCCTTCGGCG AGCGCACGCG CAGCGCCGAG GCCATCAATG CCGAGCTGGG CGCCAAGTTC
TCGCAGATCG AGGGCGGCTT CGCCTATGCG CTGATGCCCC CGCCCATCCA GGGCCTGGGC
AACGGCTCGG GCTACTCGCT ATTCCTGCAG GACCGCGCGG GCCTGGGCTA CGCGGCGCTG
CAGCAGGCGC TGCAGGCCTT CCAGGCCGAG ATCGCCAAAA CGCCGGGCAT GACCTACCCG
GTCAGCAGCT ACCAGTCCAA CATCCCGCAG CTGGAAGTCA AGGTGGACCG CACCAAGGCC
AAGGCCCAGG GCCTGGCGCT GACCGACCTG TTCCAGACGC TGCAGGCCTA CCTGGGATCG
GTCTACGTCA ACGACTTCAA CGCCTTCGGC CGCGTCTGGC GCGTGATGCT GCAGGCCGAC
GCGGACCACC GCCAGACCGT GGAGGACATC GCCAGTCTGC GCACGCGCAA TGCGCGCGGC
GAGATGGTGC CCATAGGCTC CATGGTCACC GTGGTGCCCA GCTTCGGCCC CGACCCGGTG
CTGCGCTACA ACGGCTTCCC GGCGGCCGAT CTGATCGGCG ACTCCGACCC GCGCGTGCTG
TCCTCGGGCG AGGTGCTGGC CAAGCTCCAG GAGATCGCGC AGCGCACGCT GCCGCGCGGC
ATCGAGCTGG CCTGGACCGA CCTGAGCTAC CAGCAGGTGG AGCAGAGCAA CGCCGCGGCC
GTGGTCTTCG CCATTGCCGT GATGCTGGTC TTCCTGGTGC TGGCCGCGCT CTACGAAAGC
TGGACGCTGC CGCTGGCCGT GATCCTCATC GTGCCCGTGT GCATCTGCGC GGCGCTGTTC
GGCGTCTGGC TGGCCGGGGG GGACAACAAC GTCTTCGTGC AGGTGGGCCT GGTTGTGCTG
ATGGGGCTGG CCTGCAAGAA CGCCATCCTG ATCGTGGAAT TCGCGCGCGA GCTGGAGCTG
CGCGGCGTGG GCATCGTCGA TGCCGCGCTG CAGGCCTGCC GCCTGCGGCT GCGCCCCATC
GTCATGACCT CGATCGCCTT CATCGCGGGG GCCGTGCCTT TGCTCATCGG TGGCGGCGCG
GGCAGCGAGG TGCGCGCGGC CACGGGCGTG ACCGTGTTCT CGGGAATGCT GGGCGTGACC
CTGTTCGGCC TGTTCCTCAC GCCGGTGTTC TACGTCACGC TGCGCCGGCT TTCGGGCCGC
GCGCTGACGG GGCATGCGCC TGCGCATTCC ACCGGGCCTG CCCAGCCCGC CTCCCTGGAG
TCCCCACATG CCTGA
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| Protein sequence | MDFSKFFIDR PIFAVVLSII LFAVGLVAIP QLPVGEYPEV VPPSVVVRAT YPGANPKEVA
ESVAVPLEEA INGVEGLMYM KSVAASDGSL QVVSTFRPDV DPDTAAVRVQ NRVSQAQSRL
PEEVRQFGVT TQKQSSTPLM YVGLVSQDGQ HDALYLRNYV TLKIKDVLAR IPGIGDVGIY
GAGDYAMRVW LDPDKVAARQ LTAPEVIAAI REQNIQVSAG QLGAQPSPQS ADKLLSINVR
GRLKTPEEFG SIVLKGGADG QVVRLADVAR IELGASDYTL RSWSDKKNMA AVGIFLSPGA
NALGVAEQVY AAMDKLSQDL PEGVAFETVW DPTVFVRDSI KAVQSTLIEA VILVVLVVIV
FLQTWRASII PLLAVPVSIV GTFAGLYLLG YSINTLTLFG LVLAIGIVVD DAIVVVENVE
RYIEEGHTPL EAAHLAMKEV SGPIIAIALV LCAVFVPMAF LSGVTGQFYK QFAVTIAIST
VISAINSLTL SPALAAKLLQ PRGAPRDPLA RGLDRSLGWL FRPFNRFFDR SAHGYQNSVG
HSLRRRGLVF AVYAALLAGT AVLFQAVPGG FIPLQDKLYL FGGAKLPEGA SLNRTDAVTR
QMVDAAKSVE GVDMVAAFAG FNALQSTTTP NLTSAYIMLK PFGERTRSAE AINAELGAKF
SQIEGGFAYA LMPPPIQGLG NGSGYSLFLQ DRAGLGYAAL QQALQAFQAE IAKTPGMTYP
VSSYQSNIPQ LEVKVDRTKA KAQGLALTDL FQTLQAYLGS VYVNDFNAFG RVWRVMLQAD
ADHRQTVEDI ASLRTRNARG EMVPIGSMVT VVPSFGPDPV LRYNGFPAAD LIGDSDPRVL
SSGEVLAKLQ EIAQRTLPRG IELAWTDLSY QQVEQSNAAA VVFAIAVMLV FLVLAALYES
WTLPLAVILI VPVCICAALF GVWLAGGDNN VFVQVGLVVL MGLACKNAIL IVEFARELEL
RGVGIVDAAL QACRLRLRPI VMTSIAFIAG AVPLLIGGGA GSEVRAATGV TVFSGMLGVT
LFGLFLTPVF YVTLRRLSGR ALTGHAPAHS TGPAQPASLE SPHA
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