| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3687 |
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| Symbol | |
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| ID | 5742711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 4530415 |
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| End bp | 4534251 |
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| Gene Length | 3837 bp |
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| Protein Length | 1278 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641294797 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_001560773 |
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| Protein GI | 160881805 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAAA ACAGAATACG TCCGATTAAG GTTGGAAAAG GCGTAAGAAT GAGCTATTCA
AAGCAAAAAG AAGTACTTGA AATGCCAAAT CTCATTGAAG TTCAGAAGGA TTCCTATCAG
TGGTTTTTAG AGGAAGGCCT AAATGAAGTA TTCGATGATA TTTCGCCGAT CGAAGATTAT
AGCGATCATC TTAGCCTTGA GTTCGTAAGC TTTCAGCTCT GCGAGGATGA TGTTAAGTAT
TCGATTGAAG AATGCAAGGA AAGAGATGCA ACCTATGCGG CTCCGTTGAA AGTAAAAGTT
AGACTTCGTA ACAAAGAGAC GGAAGAAATC AATGAACATG ACATCTTCAT GGGTGACTTA
CCTTTAATGA CTGAGACTGG TACCTTTGTT ATCAATGGTG CTGAACGTGT TATCGTTAGC
CAGTTAGTAC GTTCCCCTGG AATTTATTAT GCAATTCAAC ATGATAAAGT TGGTAAGACT
CTTCACTCCT CTACAGTAAT TCCTAACAGA GGTGCTTGGT TAGAGTATGA AACAGATTCC
AACGATGTAT TTTATGTTCG AGTAGATAGA AATAGAAAAG TTCCGATTAC TGTATTGCTA
CGTGCTATGG GTATCGGTTC CAACGCTGAA ATTGTTGAGA TGTTTGGTGA AGAACCAAAG
ATTTTAGCAA GCTTTAGCAA AGACCCATCT GATAACTATC AAGATGGTCT TCTTGAGTTA
TACAAAAAAC TTCGTCCAGG TGAACCACTT TCCGTTGAAA GTGCAGAGTC CTTAATTAAT
AGTATGTTCT TCGATCCTAG AAGATATGAC CTTGCTAAGG TTGGACGTTT TAAGTTTAAT
AAGAAGTTAG CTTTGAAAAA CCGAGTTCTA GGTTTCCCTT TAGCTGAGGA TGTTGTTGAT
ACAGAGACAG GTGAAATCTT AGCAGAGGCT GGTACAATTA TTACAGAAGC TCTTGCAATT
CGTATTCAGA ATAGAGCGGT TAAATCTATC TTAGTTCAGG CAGAAGAACG TAATGTTGTT
GTTCTTTCTA ATATGATGGT TGATTTTGAA GAGTATGCCA CACTTGACTG TGACAAAGAA
GAGTTAGGAA TCACAGAAGA AGTTTACTAC CCAGCTCTTC GTATGATTTT AGATTCCTGC
AGCAGCCAAG AAGAAATTAA AGATGCTGTA GCAAAGCATA TTACTGATTT AATTCCAAAG
CATATTACAA AGGATGATAT CTATGCATCC ATCAATTACA ATATGCACTT AGAATATGGA
ATTGGTAATG AAGATGATAT TGACCATTTA GGAAATCGTC GTATTCGTGC GGTAGGTGAA
TTATTACAGA ACCAGTACAG AATCGGTCTT TCCAGAATGG AGCGTGTTGT TCGTGAAAGA
ATGACAACTC AGGATTTAGA AGGAATTAGT CCACAATCCT TAATTAATAT TAAACCAGTA
ACAGCAGCAG TGAAGGAATT CTTCGGAAGT TCTCAGTTGT CCCAGTTCAT GGATCAGAAC
AATCCTCTTG GTGAGCTTAC ACATAAGAGA CGTCTTTCTG CTCTTGGTCC TGGTGGTCTT
AGTCGTGATC GTGCGGGATT CGAGGTTCGT GACGTTCACT ATTCTCACTA TGGTAGAATG
TGTCCAATTG AGACACCAGA AGGTCCAAAC ATCGGTCTTA TCAACTCCTT AGCATCTTAC
GCTAGAATTA ATCAGTATGG TTTTATTGAG GCACCTTATC GTAAGGTGGA TAGAACTGAC
CCTGAAAATC CACGTGTTAC AGAAGAAGTT GTTTACTTAA CAGCGGATGA GGAAGATAAA
TATGTTGTTG CACAGGCAAA TGAGCCGTTG GATGAAACAG GATATTTTGT AAATCAGAGT
GTATCTGGTC GTTACAGAGA AGAGACTTCT TCTTATCAGA AGAGAAAAGT TGATTTAATG
GACGTTTCTC CTAAGATGGT ATTCTCTGTT GCTACAGCGA TGATTCCGTT CCTTCAAAAT
GATGATGCGA ACCGTGCGCT CATGGGATCT AACATGCAGC GTCAGGCAGT GCCATTGTTA
TTTACTGAGG CACCTGTTGT TGGAACAGGT ATGGAATTAA AAACAGCAGT AGACTCTGGT
GTTTGTGTTG TATCAAAGAA AGCGGGTACT GTTGAGAAAT CTACATCCCG TGAAGTTATA
ATAAAGAATG ATGATGGAAC AAAGTCAAGC TATCGTCTTG TTAAATTTGC AAGAAGTAAC
CAGGGTACTT GTATCAACCA AAGACCAATC GTGGTAAAGG GAGATAAGGT AGAAGCTGGC
GAGGTTATTG CGGATGGTCC ATCTACTGCA AATGGTGAAT TAGCACTTGG TAAAAGCCCA
TTAATCGGAT TTATGACCTG GGAAGGTTAT AACTACGAGG ATGCGGTATT ATTAAGTGAA
AGACTTGTTC AGGAAGATGT TTATACTTCT GTTCATATTG AAGAATACGA AGCAGAAGCT
CGTGATACAA AACTCGGACC AGAAGAAATC ACAAGAGATG TTCCAGGTGT TGGTGATGAT
GCACTTAAGG ATCTTGATGA AAGAGGTATT ATCCGTATCG GTGCTGAAGT TCGTGCCGGA
GATATCTTAG TTGGTAAGGT TACACCAAAG GGTGAAACAG AGCTTACCGC AGAAGAGAGA
CTACTTCGTG CAATCTTTGG TGAGAAAGCA AGAGAAGTTC GTGATACTTC CCTTCGTGTT
CCTCACGGTG AGTACGGTAT TATCGTAGAT GCTAAGGTAT TCACAAGAGA AAACGGTGAT
GAATTATCTC CTGGTGTTAA CCAGACAGTA CGTGTTTATA TTGCTCAAAA GAGAAAGATT
CAAGTTGGTG ATAAGATGGC TGGTCGACAT GGTAATAAGG GTGTTGTTTC CCGTGTGTTA
CCAGCAGAAG ATATGCCATT CCTACCAAAT GGTAGACCGC TTGATATCGT ATTAAATCCT
CTGGGCGTAC CTTCTCGTAT GAACATCGGT CAGGTATTAG AAATTCACTT AAGTCTTGCT
TCCAGAGTAC TCGGATTTAA TGTTTCAACA CCAGTATTTG ACGGTGCAAA CGAGTACGAC
ATTATGGACA CTTTAGAGCT TGCGAACGAT TATGTAAATG CTCCATTAGA TAAATTCGAA
GCAAAATATA AAGATATATT AGATCCAGAA GTTATGGATT ACCTTGTATC TAATGAGGAT
TACAGAAAAC AGTGGGAAGG TGTTCCAATT AACCGTGATG GTAAGGTTCG TCTCCGTGAT
GGTAGAACCG GTGAGTACTT TGATAGTGCT GTAACCGTTG GATTCATGCA CTACTTAAAA
CTTCACCACT TAGTAGATGA TAAGATTCAT GCTCGTTCTA CTGGTCCTTA CTCTTTAGTA
ACTCAGCAGC CTCTTGGTGG TAAAGCTCAG TTCGGTGGTC AGAGATTCGG TGAGATGGAG
GTTTGGGCAC TTGAGGCATA TGGTGCTGCT CATATCTTAC AGGAAATCTT AACTGTGAAG
TCCGATGACG TTACAGGACG TGTTAAGACT TATGAAGCAA TCATTAAAGG CGATAATATA
TCAGAACCTG GTATTCCGGA ATCCTTTAAG GTACTCCTTA AGGAACTTCA GTCTCTTGCA
CTTGATGTTA CAGTTCTTGA TGAGAACGGT GATGAAGTTA AGATGACAGA AAACATCGAT
TACGGTGAAA CAGAGTTTAC GCAGTATATT GAGGAAGATA ACTTCAAATA TGATGAGGGC
TTTGAAGAAG CTGGATACAG TGAAGTGAAT CCGGAGGAAG AAAGCGACAC ATTCGAAAGC
TTCGACGAGA ATGAAAGCGT AGTGGATTTT AGTGAGTCGG ATGATTTCGG AGAATAA
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| Protein sequence | MDKNRIRPIK VGKGVRMSYS KQKEVLEMPN LIEVQKDSYQ WFLEEGLNEV FDDISPIEDY
SDHLSLEFVS FQLCEDDVKY SIEECKERDA TYAAPLKVKV RLRNKETEEI NEHDIFMGDL
PLMTETGTFV INGAERVIVS QLVRSPGIYY AIQHDKVGKT LHSSTVIPNR GAWLEYETDS
NDVFYVRVDR NRKVPITVLL RAMGIGSNAE IVEMFGEEPK ILASFSKDPS DNYQDGLLEL
YKKLRPGEPL SVESAESLIN SMFFDPRRYD LAKVGRFKFN KKLALKNRVL GFPLAEDVVD
TETGEILAEA GTIITEALAI RIQNRAVKSI LVQAEERNVV VLSNMMVDFE EYATLDCDKE
ELGITEEVYY PALRMILDSC SSQEEIKDAV AKHITDLIPK HITKDDIYAS INYNMHLEYG
IGNEDDIDHL GNRRIRAVGE LLQNQYRIGL SRMERVVRER MTTQDLEGIS PQSLINIKPV
TAAVKEFFGS SQLSQFMDQN NPLGELTHKR RLSALGPGGL SRDRAGFEVR DVHYSHYGRM
CPIETPEGPN IGLINSLASY ARINQYGFIE APYRKVDRTD PENPRVTEEV VYLTADEEDK
YVVAQANEPL DETGYFVNQS VSGRYREETS SYQKRKVDLM DVSPKMVFSV ATAMIPFLQN
DDANRALMGS NMQRQAVPLL FTEAPVVGTG MELKTAVDSG VCVVSKKAGT VEKSTSREVI
IKNDDGTKSS YRLVKFARSN QGTCINQRPI VVKGDKVEAG EVIADGPSTA NGELALGKSP
LIGFMTWEGY NYEDAVLLSE RLVQEDVYTS VHIEEYEAEA RDTKLGPEEI TRDVPGVGDD
ALKDLDERGI IRIGAEVRAG DILVGKVTPK GETELTAEER LLRAIFGEKA REVRDTSLRV
PHGEYGIIVD AKVFTRENGD ELSPGVNQTV RVYIAQKRKI QVGDKMAGRH GNKGVVSRVL
PAEDMPFLPN GRPLDIVLNP LGVPSRMNIG QVLEIHLSLA SRVLGFNVST PVFDGANEYD
IMDTLELAND YVNAPLDKFE AKYKDILDPE VMDYLVSNED YRKQWEGVPI NRDGKVRLRD
GRTGEYFDSA VTVGFMHYLK LHHLVDDKIH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME
VWALEAYGAA HILQEILTVK SDDVTGRVKT YEAIIKGDNI SEPGIPESFK VLLKELQSLA
LDVTVLDENG DEVKMTENID YGETEFTQYI EEDNFKYDEG FEEAGYSEVN PEEESDTFES
FDENESVVDF SESDDFGE
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