| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3521 |
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| Symbol | |
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| ID | 5743633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 4349614 |
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| End bp | 4350732 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641294632 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001560609 |
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| Protein GI | 160881641 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0582772 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGAAA CCATGGCAAA ATTTCACGAG AAGCTGAAAG AATTGTTGGA GTATGCAAAA
AAGAAAAAGA ATGTACTAGA ATACGAAGAG ATTAATGACT TCTTTTCTGA TATGGAGATT
GATGCGGACC GTATTGAGAA GATCTATGAG TATTTAGAGG CACATAATAT TGATGTTTTG
CGTGCACCAG AATTAGAGGA AGAAGAAGAG ATTGATGAAA GCGATTTAGC TTTGATCGAA
GCAGAAGAAG AGGAAATAAC TAACATCGAT TTAACGGTAC CAGAGGGAAT TAGTACAGAA
GATCCGGTGC GAATGTATCT TAAGGAAATT GGTAAAGTAC CGCTTTTAAG TGCAGATGAA
GAAATTGTTC TTGCTCAGCG TATGGAGCAA GGAGATAAAA ATGCAAAGAA AAGACTTGCA
GAAGCAAATT TAAGGCTGGT AGTTAGCATA GCAAAACGCT ATGTTGGCCG TGGCATGCAG
TTTTTAGATT TAATACAGGA AGGAAATCTT GGATTAATTA AAGCGGTAGA AAAATTCGAT
TATCGAAAAG GATATAAATT TAGTACGTAT GCAACTTGGT GGATTCGTCA GGCGATAACA
AGAGCCATTG CAGATCAGGC GAGAACAATC CGTATTCCAG TTCATATGGT AGAGACCATA
AATAAATTAA TCCGTGTGCA ACGCCAGCTA TTACAAGAGC TTGGTAGAGA ACCATTTCCA
GAAGAAGTTG CTAAGGAAAT GAATATTCCA GTAGAACGTG TACGTGAAAT TCAGAAAATT
TCTCAAGAAC CAGTTTCTCT TGAAACTCCA ATCGGTGAGG AAGAAGACAG TCACTTGGGT
GATTTTATTC AGGATGATAA CGTACCAGTT CCAGCAGAAG CAGCAGCTTT TACTTTATTA
AAAGAACAGT TAATGGAGGT ACTTGGCACA TTAACTGATC GTGAGCAAAA AGTATTGCGA
TTACGTTTTG GGTTAGATGA TGGTCGTGCC AGAACGCTGG AAGAAGTAGG AAAAGAGTTT
AATGTAACGA GAGAACGAAT CCGTCAAATC GAGGCAAAAG CACTTCGCAA ATTGAGACAC
CCAAGTCGTT CTCGCAAATT AAAGGATTAT TTAGAGTAA
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| Protein sequence | MDETMAKFHE KLKELLEYAK KKKNVLEYEE INDFFSDMEI DADRIEKIYE YLEAHNIDVL
RAPELEEEEE IDESDLALIE AEEEEITNID LTVPEGISTE DPVRMYLKEI GKVPLLSADE
EIVLAQRMEQ GDKNAKKRLA EANLRLVVSI AKRYVGRGMQ FLDLIQEGNL GLIKAVEKFD
YRKGYKFSTY ATWWIRQAIT RAIADQARTI RIPVHMVETI NKLIRVQRQL LQELGREPFP
EEVAKEMNIP VERVREIQKI SQEPVSLETP IGEEEDSHLG DFIQDDNVPV PAEAAAFTLL
KEQLMEVLGT LTDREQKVLR LRFGLDDGRA RTLEEVGKEF NVTRERIRQI EAKALRKLRH
PSRSRKLKDY LE
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