| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3423 |
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| Symbol | |
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| ID | 5743534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 4202806 |
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| End bp | 4206939 |
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| Gene Length | 4134 bp |
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| Protein Length | 1377 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641294535 |
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| Product | recombination helicase AddA |
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| Protein accession | YP_001560515 |
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| Protein GI | 160881547 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02785] recombination helicase AddA, Firmicutes type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCAAAGA CGAGTTGGAC ACCGGGGCAA CAGAAGGTAA TTGATACTAG AGATTGCAAT
CTTTTAGTTT CTGCAGCTGC AGGTTCTGGA AAAACTGCTG TTCTAGTAGA GCGCATAATC
AATCGGATTA CGTCCGAAAA CTCTCCGATT AATATTGATC AATTGCTTAT TGTTACATTT
ACAAAGGCAG CAGCTGGAGA GATGAGGGAA CGTATTGGCG CTGCGATTGA AAAGAAGGTA
TTGGAGCAGC CTGACAATGT TCATCTGCAA AAACAGCTGA CACTTTTATA TAGTGCTCAA
ATCACCACAA TTGATAGTTT TTGCTTATCG GTAATTCGAA ATCATTTTCA TACCATTGAC
CTAGACCCTT CGTTTCGGAT TGCAGAGGAA GCAGAATTAA TGTTATTAAA ATCTGATGTA
TTAGCTACTT TATTGGAAGA AAAGTATGAG GAAGGTGCTG AAGATTTTTT AGAATTTGTG
GAATGTTATT CTGCTTCAAA ATCAGATGAG CCAATTGAGA ATTTTATATT AAAGCTATAT
CAATTTTCGC AAAGTTATCC TTATCCGCAT GAATGGCTGG AGGAGAGAGA AAAGGATTTC
TTAGTTGAGA CAGCAGAAGA TATCAATCAA ACTAGCTGGA TGAAACAACT CCTTCAATAT
GTTAAGGCAA TCCTTCGTGA GGCTTCTGAT TTGTGTGCAA AAGCAATCGA GATTACGAAT
TACCCGGATG GACCAAAGCC TTATCTGGAT GCATTATTAT CAGATCAAGA GATAATAGAA
AGGCTCCTTA ACTCTGATGC AGGTTCACAG CATTCGTACG AAGAGTATCA GGATGCATTT
TCTAACATAA CATTTGCGAG GTTATCTACG AAAAAATGGC CGGATGCAAC AGAGGAAAGA
AAAGAAGAAG TAAAGGCAAT ACGTCAGATG GTAAAAAAGA TACTTTCTGA TTTATCTGAC
GATTTCTTTT TTCAACCAAT GGAGGACATG CTTACGGATA TGAGAAAAGT CCGTAGGCCT
ATGTTGGTAT TGTTATCACT TACTCATGAC TTTTTAGAAC GACTAGATGC TTCGAAGGAA
GAGAATAATC TTGTAGATTT TTCAGATATT GAGCACTTTG CACTTAATAT CCTAGTTACA
AAAGAGGATG GGAATCTTGT TCCTACAAAA GTTGCAACTG AGATGAGCGA ACAATTTGTA
GAGATTATGA TTGATGAATA TCAAGATAGT AACTATGTTC AGGAATATAT CTTAAGTAGT
ATTTCTAAGG TTACTAGAGG ATGTCCGAAC GTATTTATGG TTGGTGATGT GAAGCAGAGT
ATTTATAAAT TCCGTATGGC AAGACCAGAA CTGTTTATGG AAAAATACGA GCAGTATTCG
ACGGAGGAAG GATTATATCG TCGTATTGAT TTAAGTAAGA ACTTTCGAAG CAGAGCGGAA
GTGCTAGATA GCATTAACGG AGTCTTTGAA AAGATTATGA CAAAAGCCAT GGGAGGAATT
GAATATACCA AAGAGGTCTC ACTTTACCCT GGTGCACAAT TTCCAGAGAT AGGGATGGAT
TTAGACAACA CCTCTTTTCT ATTCTCGGAC ACAAAGACAG AACTTATTAT TCTAGATTTA
AAAGAAGAGG AAGCTTCGAT ACCGGATTCT ATGGATCGGT TGGATGTGAT GGCGTTAGAA
GAGGATGCAA TAGAGCTTAG CAAGCGAGAA TTGGAAGCGA AGGCTGTTGC TATGCGTATA
AAGCAATTAG TGCATGGGGA GAGAGGATTC TCAGTAACGA AAAGAAACGG AGAGGAACAG
GACCTAAAGC GTTGTCAGTA CCGTGATATC GTTATTTTAT TACGTACAAT GTCTGGTTGG
TCAGAGACCT TTACTGAAAT ATTAAAACAG GAAGGGATTC CAGCATATTC TGATACGCAG
ACAGGGTATT TTCAGACTTT GGAAGTAAAA ACTGTTTTAA ATTATCTTAG AATACTTGAT
AATCCAAGGC AAGATGCCCC GTTAACCGCT ATTCTTTATT CTCCAATTGT AGGATTAAGT
GCAGAACAAT TATCATTTCT TAGAGTGAAA CCGGGAAAGG GAGCAGAGAA GTTATCTATT
TATGATGCTG CAAGAGAATG TGCTTTAAAT TATTTGGAAA TACAAGACGA AGTAACTCAA
CCGGAAGAAA CTCAACCGGT TTATGACAGT ATTATTCAAG CAGATTTGAT GTATGAAAAA
AGCAGCGCAG AGAAGACAGT TTCTATGGAC AAAAACTTAA TAGAAACGGG AGAGAAGTTA
AAGCGTTTTT TTGCTACTTA TGATAAATTA AGAGAAAAGG CTATATACCT TCCGGTTCAT
GAGATTATTT TAGAGTTTTT TAAAGAAACT GGATATGATC TTTTTGTCTA TGCTATGCCA
GGAGGAGAAC AGCGAAGAAA TAACTTAAAT CTACTGGTTC AACATGCACT ATCTTTTGAA
GAAAGTAGTT ACCATGGATT ATTTCAATTT ATCCGTTATA TTGAAAGATT ATTAAAATTT
GAAATTGATT ATGGGGAAGC CGGTGGACTT TCGGAGAATG ACAATGCAGT TCGTATCATG
AGTATCCACA AAAGTAAAGG TTTGGAGTTT CCGGTGGTAA TACTTGCTGG AATGGGAAAA
CAATTTAATA CGATGGATGC AAGGGAAAAA ATTGTTCTTC ATGCCGATTA CGGAATCGGA
CCAGAATGCA TTGATTATCA ACTTAGAACA AAGTGTCCGA CTCTGTTAAA ACAGGTAATT
AAAAAGAATA TTGTGCTTGA TAACCTAGGA GAAGAATTAA GGGTCTTATA TGTTGCGTTA
ACGAGAGCCA AGGAAAAGCT AATTATGATT GGCAGTGCAA ATGATGCAAA TGATGTGTTT
GATAAATGGA GACAAGATTC TACACCTGGA GTTACTCCTT TGCGGTTTCA AACATTGGCT
ATGGCGAAAG ATTATTTTTC TTTTGTTGGT CCAGCAGCAC TTTATGATTC TAGAATCCGA
GTCATCACGC TTACACCGAA TGATTTGTTG GAGGATGAAT ATGAAAAACA GACGGATATT
AAGAATAAAC AAGAGGAATT AAATCCATAT AATTTCCTTC AAAGCTTTGA GGAAGAATCG
GATGAGCAAT CAGATGAAGA ACGATCAGAT GAAGAACGAT CAGACGGAGA ACAATCAGAT
GGAGAACAAT CAGATGGAGA ACAGCCTAGA AAAGACCTTT TAACAAAACT ATCTTTCCGA
TATCCATATG AACATGAGGC AATGCTACCA ATAAAAACTA CGGTAAGTGA ATTAAAAAAA
TTAAGCCAAC AGGTAGATGA GGAATTGACA GAGACGTTTA CTCAAGTTAA GGATGAATTG
ACAAAGACGT GGCCTCAAGT AGATGAGGAA TTGACAGAAA AGTACCCTCA AGTTGAGGAA
TTGATAGAGA CGAGCCCACC GGTAAAAGAG GAAAGTCAAA TGTTAATAGA GCCTACTATA
CCTAAGTTTT TAAAAGAGGA AAAAGAACTA AGAGGAACGG AACGAGGAAA TCTGTATCAC
AAGATTTTGG AACTGATAGA TTTTTCGGAT AATAAAACGA AGCTTAACTT AAGGGAGTTT
GTTTCTCAGT TAGCAAATCG TGGTCTCATA CAGGAAGAAT CTATATCGAG TATTAATTTT
GAGCGGCTTT CACGTTTTTT TGAGTCAGAA CTTTATCAAC GTATACAGAT TGCTTATCAA
AAAGGATATC TCTACCGAGA ACAACCATTT GTAATCGGTA TCCCAGTAAG AGAGATAAGT
ACACAGAAGT TTGTGCGGAC GACGCAGGCA CAAGCCTCCA GCATACTAAG CAAAAACGAA
GATTTTTCAC ACGCGAATTT GTGCAGTTGT CCAAATTCAC AGGATTACGA AAATGATGAT
TTAGTATTAA TACAAGGTAT TATTGATGTT TATTTTGAAG AAGAGGATGG AATTGTTTTA
GTAGATTATA AAACAGATGC AGTGGGTGAA TTAGGAGAAG AAGAACTCAT AAGGCGGTAT
CAAGAACAAA TACGCTATTA TGAGAGGGCA CTGAATCAGT TACTTGACAA AACGGTTAAA
GAAAAGATTA TTTATTCTTT CTCTCTTGGT AAGGAAATCA GAATAAAATC ATAG
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| Protein sequence | MAKTSWTPGQ QKVIDTRDCN LLVSAAAGSG KTAVLVERII NRITSENSPI NIDQLLIVTF
TKAAAGEMRE RIGAAIEKKV LEQPDNVHLQ KQLTLLYSAQ ITTIDSFCLS VIRNHFHTID
LDPSFRIAEE AELMLLKSDV LATLLEEKYE EGAEDFLEFV ECYSASKSDE PIENFILKLY
QFSQSYPYPH EWLEEREKDF LVETAEDINQ TSWMKQLLQY VKAILREASD LCAKAIEITN
YPDGPKPYLD ALLSDQEIIE RLLNSDAGSQ HSYEEYQDAF SNITFARLST KKWPDATEER
KEEVKAIRQM VKKILSDLSD DFFFQPMEDM LTDMRKVRRP MLVLLSLTHD FLERLDASKE
ENNLVDFSDI EHFALNILVT KEDGNLVPTK VATEMSEQFV EIMIDEYQDS NYVQEYILSS
ISKVTRGCPN VFMVGDVKQS IYKFRMARPE LFMEKYEQYS TEEGLYRRID LSKNFRSRAE
VLDSINGVFE KIMTKAMGGI EYTKEVSLYP GAQFPEIGMD LDNTSFLFSD TKTELIILDL
KEEEASIPDS MDRLDVMALE EDAIELSKRE LEAKAVAMRI KQLVHGERGF SVTKRNGEEQ
DLKRCQYRDI VILLRTMSGW SETFTEILKQ EGIPAYSDTQ TGYFQTLEVK TVLNYLRILD
NPRQDAPLTA ILYSPIVGLS AEQLSFLRVK PGKGAEKLSI YDAARECALN YLEIQDEVTQ
PEETQPVYDS IIQADLMYEK SSAEKTVSMD KNLIETGEKL KRFFATYDKL REKAIYLPVH
EIILEFFKET GYDLFVYAMP GGEQRRNNLN LLVQHALSFE ESSYHGLFQF IRYIERLLKF
EIDYGEAGGL SENDNAVRIM SIHKSKGLEF PVVILAGMGK QFNTMDAREK IVLHADYGIG
PECIDYQLRT KCPTLLKQVI KKNIVLDNLG EELRVLYVAL TRAKEKLIMI GSANDANDVF
DKWRQDSTPG VTPLRFQTLA MAKDYFSFVG PAALYDSRIR VITLTPNDLL EDEYEKQTDI
KNKQEELNPY NFLQSFEEES DEQSDEERSD EERSDGEQSD GEQSDGEQPR KDLLTKLSFR
YPYEHEAMLP IKTTVSELKK LSQQVDEELT ETFTQVKDEL TKTWPQVDEE LTEKYPQVEE
LIETSPPVKE ESQMLIEPTI PKFLKEEKEL RGTERGNLYH KILELIDFSD NKTKLNLREF
VSQLANRGLI QEESISSINF ERLSRFFESE LYQRIQIAYQ KGYLYREQPF VIGIPVREIS
TQKFVRTTQA QASSILSKNE DFSHANLCSC PNSQDYENDD LVLIQGIIDV YFEEEDGIVL
VDYKTDAVGE LGEEELIRRY QEQIRYYERA LNQLLDKTVK EKIIYSFSLG KEIRIKS
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