| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3023 |
|---|
| Symbol | |
|---|
| ID | 5743349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3692529 |
|---|
| End bp | 3693836 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641294124 |
|---|
| Product | Alpha-L-fucosidase |
|---|
| Protein accession | YP_001560119 |
|---|
| Protein GI | 160881151 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3669] Alpha-L-fucosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.202324 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGTA AAAAAACAGA TTGGTTTTGT GATGCTCGTT TTGGCATGTT TATTCATTGG
GGGCTTTATG CAATACCTGG ACAGGGCGAA TGGTATATGA GCTTTGATAG GGTAAATGCG
AAAGATTACG AAAAATATTT CAATGAATTT AATCCCCAGG AATTTGATCC AAGACAATGG
GCGCAGCTTG CTAAAGAAGC AGGTATGAAA TATATAGTGC TTACAGCAAA ACACCATGAT
GGTTTTTGCT TGTTTGACAG TAAGTATACA GATTATAAAT CTACCAATAC AAAAGCAGGA
AAAGATTTTA TCAAAGAATA TGTAGAAGCA GTACGTGAAG CAGGACTAAA GGTAGGAATC
TATTATTCTC TTTTAGACTG GCATCACCCA GACTATCCAA AATATAATGA TATGTTCCAT
CCTATGCGTG AGAATGAAGC CTATAAAGAA GACAAGTATG ATTGGGACAA TTACTTAAAC
TACATGCATG GACAGGTTGA GGAGCTTTGC AGTAATTATG GAAAGTTAGA TCTGTTATGG
TTTGATTTCT CTTATGGGGA CATGAAGGGA GAGAAATGGA AAGCAACCGA ACTTATGGAG
ATGGTAAGAA GATTACAGCC AGAGGCATTG GTGAATGACC GATTAGAAGG TGGCGGTAGT
AGTCATGGTT CTATTATGGA AGGAACTCCA AGTAAAATCG CTGGAGATTT TGCAAGTCCG
GAACAGTGTA TGCCAACGAG TGAGCTTTGC AATAAAAAAG GTGAGCCTGT AGTATGGGAA
TTATGTACAA CCATAAATGA TTCATGGGGC TATGTGCCAA GTGACAGAAA TTATAAATCA
GCAGAATTTT TAATCCACAA ATTAGTTGAA TGCGTATCCA AAAGCGGCAA TCTGATTTTA
AATGTGGGAC CGGATGCACA GGGAAGAATT CCAAAAGAAC AGGTAGAGGC CTTAAGGCAG
ATCGGGGCAT GGATGAAAAT GAATGGAGAA AGCATCTATG GCTGTGAAGG AGCGAAGTTA
CCAAGACCAG AATGGGGACG TTATACTCAA AAAGAAAATA TTTTATATGC TCATATTATG
GAAGCACCGA TTGGTCCAAT CCCAATAACA GGAGTTGCAA AAGAGCAGAT TGAGAGTATA
AGGGTTTTAT GGGACGGTAG TGAGGCAAAA GATGCTTCTT TGGCACTTGG ACCAAGAAAG
CATCCAGAAA CTAAGTTTAT TACTTTTGGC AATAATGGGA ATTTTACATA TCCACTTCCC
ATCGAAGCAG ATACCGTATT AAAGATTGTA GTCAAAGGAA ACTTGTAA
|
|---|
| Protein sequence | MNSKKTDWFC DARFGMFIHW GLYAIPGQGE WYMSFDRVNA KDYEKYFNEF NPQEFDPRQW
AQLAKEAGMK YIVLTAKHHD GFCLFDSKYT DYKSTNTKAG KDFIKEYVEA VREAGLKVGI
YYSLLDWHHP DYPKYNDMFH PMRENEAYKE DKYDWDNYLN YMHGQVEELC SNYGKLDLLW
FDFSYGDMKG EKWKATELME MVRRLQPEAL VNDRLEGGGS SHGSIMEGTP SKIAGDFASP
EQCMPTSELC NKKGEPVVWE LCTTINDSWG YVPSDRNYKS AEFLIHKLVE CVSKSGNLIL
NVGPDAQGRI PKEQVEALRQ IGAWMKMNGE SIYGCEGAKL PRPEWGRYTQ KENILYAHIM
EAPIGPIPIT GVAKEQIESI RVLWDGSEAK DASLALGPRK HPETKFITFG NNGNFTYPLP
IEADTVLKIV VKGNL
|
|---|
| |