| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2722 |
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| Symbol | |
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| ID | 5743015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 3309011 |
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| End bp | 3311083 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 641293814 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001559822 |
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| Protein GI | 160880854 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000409136 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAT ATTTAGTAAT TGTGGAATCA CCTGCAAAGG CAAAAACAAT AAAAAAATTT
TTAGGAAATA ATTATGAGGT TCTTGCATCA AACGGTCATG TAAGGGATTT ACCAAAAAGT
CAAATGGGAA TCGATGTTGA GAATGGATTT GAACCTAAAT ACATTACGAT TCGTGGAAAA
GGAGATTTGC TAGCAAAACT CCGTAAGGAA GTAAAAAAGG CAGATAAAGT TTATCTCGCA
ACTGACCCTG ACCGTGAAGG AGAAGCGATT TCTTGGCATT TATCACAAAC GTTAAAGTTA
GATGATAAGA GCGCAAGTCG AATTACCTTC AATGAAATCA CAAAGAACGC AATTAAAAAT
TCGATTAAAG AAGCTCGCGA TATTGATATG AATCTCGTGG ATTCCCAGCA AGCAAGAAGA
ATGTTAGATC GAATGGTTGG TTATAAAATT AGTCCGCTCC TTTGGGCAAA GGTAAAGAGA
GGATTAAGTG CTGGTAGAGT ACAGTCAGTA GCACTTCGAA TCATCTGTGA CCGTGAAGAG
GAAATTAACG ATTTTGTTCC TAAGGAATAT TGGAACCTAG ATGCTTCTTT TAAAGTAAAA
GGTGAAAAAA AGTCATTGGT TGCTAAATTC TATGGAGATA CAAAAAAGAA GATTTCTATA
GAATCCAAAG AAGAGATGGA TAAAATATTA GCAGATTTAA AAGGTGCTCA GTTTAAAATT
ACGGAAGTAA AGCGTGGAGA ACGTCAGAAG AAGTCTCCGC TACCTTTTAC TACAAGTACC
TTACAACAAG AGGCTGCAAA ATTATTAAAC TTTTCCACTC AAAAAACAAT GCGTATCGCT
CAACAGTTAT ATGAAGGTGT AGATGTAAAA GGGCATGGAA CGATTGGTTT GATCTCTTAC
TTACGTACAG ACTCTATCAG AGTTTCGGAA GAAGCAGATA CAGCGGCAAG AGAATTTATA
AAAACTCAGT ACAAACCAGA ATATGTAAAC AGCCAGGACG TTAATAAAAC AACCGGGAAA
AAGATACAAG ATGCTCATGA AGCAATAAGA CCAACTTATG TAGATTTAAC GCCGGTAATT
GTAAAAGAGT CACTAAGCAG AGAGCAATTT CGTTTGTACC AGTTAATATG GAAGAGATTT
ATTGCAAGTC GTATGCAACC AGCGAAGTAT GAGACTTCAA CAGCGAAAAT CGATGGAAAT
GGATATCGTT TTACAGTTGC ATCCTCTAAG CTTATATTTG ATGGGTTCAT GGCTGTTTAC
GCGAGTGAGG ATGAAGAGGA AGAAAACACA ACTTCTAATA TGATGTCCTT GTCTGAGGAG
ACACAATTAA CATTTGAAGA ATTCAACTCT AGTCAACACT TTACGCAAGC ACCACCACAT
TATACAGAGG CTGCATTAGT AAAGACACTA GAGGAGTTAG GCATTGGTAG ACCAAGTACT
TATGCACCGA CGATAACCAC CATCATTGCA AGACGTTACG TGATCAAAGA AAATAAAAAC
CTTTATGTAA CAGAGCTTGG AGAAGCTGTT AATCGAATAA TGAAACAAGC TTTTCCTACC
ATCGTTGATG TAAATTTCAC AGTAAATTTA GAAGCTTTAT TAGATGGTGT TGAAGATGGA
GTTGTAAACT GGAAGACAGT AGTAAGTAAT TTCTATCCTG ACTTAGAAAG TGCAGTACAA
GATGCCGAAA AGCAATTGGA GCAAATAACT ATTGAAGATG AAAAGACTGA CGTTATCTGT
TCTGAATGTG GAAGAAATAT GGTTATTAAA TATGGTCCAC ACGGAAAATT CTTAGCTTGT
CCTGGATTTC CGGATTGCAG AAATACAAAA CCTTACTTTG AAAAAATCGG TGTTGCATGT
CCATTATGCG GTAGTGATAT TATTATAAAG AAAACGAAAA AAGGCCGTAG ATTTTATGGC
TGTGAGAATA ATCCAGAATG TGAATTCATG TCTTGGCAAA AACCATCCGG TAAGTTATGT
CCAATCTGCA ATGGAATTAT GGTAGAAAAA GGACAAAAAC TAGTTTGTGT CAATGAAGGC
TGCGGACATG TAGAGAATAA AGAACAAAAC TAA
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| Protein sequence | MPKYLVIVES PAKAKTIKKF LGNNYEVLAS NGHVRDLPKS QMGIDVENGF EPKYITIRGK
GDLLAKLRKE VKKADKVYLA TDPDREGEAI SWHLSQTLKL DDKSASRITF NEITKNAIKN
SIKEARDIDM NLVDSQQARR MLDRMVGYKI SPLLWAKVKR GLSAGRVQSV ALRIICDREE
EINDFVPKEY WNLDASFKVK GEKKSLVAKF YGDTKKKISI ESKEEMDKIL ADLKGAQFKI
TEVKRGERQK KSPLPFTTST LQQEAAKLLN FSTQKTMRIA QQLYEGVDVK GHGTIGLISY
LRTDSIRVSE EADTAAREFI KTQYKPEYVN SQDVNKTTGK KIQDAHEAIR PTYVDLTPVI
VKESLSREQF RLYQLIWKRF IASRMQPAKY ETSTAKIDGN GYRFTVASSK LIFDGFMAVY
ASEDEEEENT TSNMMSLSEE TQLTFEEFNS SQHFTQAPPH YTEAALVKTL EELGIGRPST
YAPTITTIIA RRYVIKENKN LYVTELGEAV NRIMKQAFPT IVDVNFTVNL EALLDGVEDG
VVNWKTVVSN FYPDLESAVQ DAEKQLEQIT IEDEKTDVIC SECGRNMVIK YGPHGKFLAC
PGFPDCRNTK PYFEKIGVAC PLCGSDIIIK KTKKGRRFYG CENNPECEFM SWQKPSGKLC
PICNGIMVEK GQKLVCVNEG CGHVENKEQN
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