Gene Cphy_2620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_2620 
Symbol 
ID5742787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand- 
Start bp3207589 
End bp3208641 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content38% 
IMG OID641293712 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_001559720 
Protein GI160880752 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATCGCG ATAAAACAAA AGTAATTACC ATTGGGAATC GACAGATTGG TGGAGGTAAT 
CCAATCTTGA TTCAATCCAT GACAAATACA AAAACGGAGG ATATCACTGC TACTGTCAAT 
CAGATATTAG AACTTGAAGA AGCAGGCTGT GATATTATTC GATGCGCAGT TCCTACTATG 
GAAGCTGCAG GAGCACTGAG GGAAATTAAG AAGAAAATTC ATATCCCTTT GGTTGCTGAT 
ATCCATTTTG ATTATCGCTT AGCAATTGCT GCTATGGAAA GTGGCGCAGA TAAGATTCGT 
ATTAATCCAG GGAATATTGG AGACATAGAA CGTGTAAAAG CGGTTATCGA TGTGGCAAAG 
GAACGTAATA TTCCAATCCG TGTTGGAGTA AACTCTGGGT CCTTAGAAAA ACATATTGTA 
GATAAATATG GGCATGTAAC TGCAGAAGGT CTAGTAGAGA GCGCGCTAGA TAAAGTTCAT 
TTGATTGAAA AATTAGGCTA TGATAATATG GTAATTAGTA TTAAGTCATC AGATGTACTT 
ATGTGTGTGA AAGCACATGA ATTAATCGCT CAGAAGACAA ATTATCCGCT GCATGTCGGT 
ATTACAGAAT CAGGCTCTAT CGTAGCAGGT AATATCAAAT CATCGATAGG TCTTGGATTA 
ATTTTAAATC AAGGTATCGG TGATACCATT CGAGTTTCCT TAACAGATAA GCCACTCGAA 
GAAATTCGTT CAGCAAAGAT TATATTAAAG ACTTTAGGAT TACGAAAAGG CGGAGTAGAA 
GTTGTATCAT GTCCGACCTG CGGTCGTACT CAAATCGATT TAATCGGTCT TGCAAAACAA 
GTGGAAGATT TAGTATCTGG CTATGATTTA GATATAAAAG TAGCAGTAAT GGGTTGCGCT 
GTTAATGGCC CTGGAGAAGC AAAAGAAGCG GACCTTGGCG TAGCAGGTGG TAGAGGTGTC 
GGATGCATTA TTAAAAAAGG TGAAATTATC CGTACTGTAC CAGAAGAATC TCTATTAGCA 
GAGCTTAAGA AGGAATTGGA TAGCTTTATA TAA
 
Protein sequence
MYRDKTKVIT IGNRQIGGGN PILIQSMTNT KTEDITATVN QILELEEAGC DIIRCAVPTM 
EAAGALREIK KKIHIPLVAD IHFDYRLAIA AMESGADKIR INPGNIGDIE RVKAVIDVAK 
ERNIPIRVGV NSGSLEKHIV DKYGHVTAEG LVESALDKVH LIEKLGYDNM VISIKSSDVL 
MCVKAHELIA QKTNYPLHVG ITESGSIVAG NIKSSIGLGL ILNQGIGDTI RVSLTDKPLE 
EIRSAKIILK TLGLRKGGVE VVSCPTCGRT QIDLIGLAKQ VEDLVSGYDL DIKVAVMGCA 
VNGPGEAKEA DLGVAGGRGV GCIIKKGEII RTVPEESLLA ELKKELDSFI