| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2619 |
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| Symbol | |
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| ID | 5742786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 3202794 |
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| End bp | 3207377 |
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| Gene Length | 4584 bp |
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| Protein Length | 1527 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641293711 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001559719 |
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| Protein GI | 160880751 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.768829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTA TTATGTTATT TTTTGAAGTG TTTGATACAC TGAATGTAGA AAAAGAAATT
TATGAATTAT TCTCCGATAT CAGCGTATTA AAGGCGTTGG TATCGAAGAA TAATGGCAAT
GTTCATATCT ACATACAGAG TACTCATCTG ATTAGTAGGA AACAAATAAA AATGATGGAA
TTTCAGCTGC AAAAGCAGCT TTTTTCATCA ACCAAAAGTC GAGTAAAGTT GATAGAAACC
TATCAACTTT CTTCGCAATA TACCCCGGAA TCATTATGGA ATATGCACAG CGATAATATT
CTAGAAGAGC TGAATGACAG TAGTGTCATG AACTACAATA TTCTTCGTAT GGCAGAGATT
TCTTTTGATG GCTATAAAAT GATATTTAAG CTTCCAGATA CTTTCTTGAA TCAGAAAAAG
TCTGAGGAGA TTAAAGTGTT TTTAGAACCA ATGTTTGAAC AACGGTTTTG TATTCCTGTC
GATATTCGAT TTGAATTTTA TGAACTAATA GAGGAAGCGA AAGAGGAAGA AGAGTATCCA
CAGGCACGAA GAGAGAAAGC AAAACAAAAT GCCAGTGGGT CTATGGAAAC AAGTGGAGAG
GTTAGCGATG AGATTCGTGC AGAAATTCCA TTTGAACTGT CTTCTTCGAA TGTGGATGGT
AATAATCTTG CAGGAAAAGA TAGCATAGAA AGTAAGTCAG AACTTAACGT TGAAAAGAAG
AAAGAAGAAA AGAAACAAAT TAAGGACGAT AAATTCTCAC AATCAGACAA GAAAAACAGT
GCGTATGATA AGGCGAAAGC ATACAAAAAG AAGCTTCCAG ATGATCCGGA TATTATTTAT
GGTCGACCAT TTGAAGGAGA TTCCATACCA ATTAAGGATA TTCAAGAGGA AATTGGTGAG
GTTGTAATTC GTGGAAAGAT TCTATTTACA GAAGAAAGAG AGTTACGAAA CGAGAAGTTT
TTAATTTCCT TTAATGTAAC TGATTTTACG GATACAATTT CAGCAAAAAT ATTTGTTCGA
ACAGAAGAGA TTGAGGACAT TCGTGGTCAG ATTAAAAAAG GTATGTTTAT CCGTTTAAAG
GGGATGGCCC TTTATGATAC GTATAGTCGT GAGATTACAA TAAATTCTAT TATAGGAATT
AAAAAAATTC CAAGCTTTAT TGAAAAACGA GTTGACCGCT ACGAAAACAA ACGTGTAGAA
TTACATGCTC ATACGATGAT GAGTGATATG GATGCGGTGG TAGATCCGCA AGCACTTGTT
AAAACAGCAT TCGAATGGGG ACATAAAGCG GTTGCGATTA CCGATCATGG TGTTGTTCAG
GCCTTTCCAG AAGCATCTCA TGCAATTAAT CCGAAGGATT ATAAGGATGA TGAAGAAAAG
ATGCAGCGTG CGAAGGACTT CAAGATTATC TATGGTATGG AAGCTTATGT TGTTGATGAT
ATGAAGGATA TCGTACAGGG AGAGTGTGGA CAAGGAATTG AAGATACTTG TGTAGTTTTT
GATATCGAGA CAACTGGATT TAGCTCTGTA AAAGATAAAA TTATAGAAAT TGGTGCAGTA
AAAATACAAC ATGGTACCAT TGTTGACCGT TTCTCTACAT TTATTAATCC TGAAGTGCCG
ATCCCATACC ATATACAAAA GTTAACAAGT ATTACAGATG AGATGGTAAT TGGTTCTAGA
ACAATTGAAG AGATACTACC CGAATTCCTA AGTTTTTGTG AAGGCTGTTA TCTGGTGGCG
CACAATGCTT CCTTTGATAT TGGATTTATT ACAAAGAAAG CGGAGTTTTT AAATATACCA
CTTACCGTAA CTTCAGTCGA CACGGTAGGG TTAGCCAGAG TTCTTTTGAA TCACTTAAAT
AATTTTAAGT TAGATACCGT AGCGAAAGCT TTAAGTATCT CATTGGAAAA TCACCATCGT
GCGGTAGATG ATGCAGGATG TACTGCAGAA ATCTATTTGA AGTTTTTAGA GATGCTTCGT
GAACGAGGTA TAGAAACTTT AGCTCAGATC AATAGAGCGG AAGAGGTCAC CCCAGATGTT
ATTAAGAAAA TGCCAACTTA TCATGCAATT ATTCTATGTC AGAATGATAT TGGTCGAGTA
AATCTATACC GGATGGTAAG TTATTCTCAC ATCAATTATT TTCAGCGTCG ACCAAGAATA
CCAAAGTCAG TACTTATGAA GCATAGAGAA GGTTTATTGA TTGGTTCTGC ATGTGAGGCA
GGTGAACTTT ATCAGGCAAT TCTTAGAAAT TCTTCCGAAG GGGAGATCGT AAGACTCGCG
AATTTCTATG ATTATTATGA AATACAACCG CTCGGCAACA ATCAGTTTAT GATTGAAAGT
GAAAAGATAG ATATTAGCTC AGAAGAAGAA TTAAAAGAGA TCAACCGTAA AATCATCGCG
TTAGGAGAGG AATATAATAA ACCAGTAGTT GCTACTTGCG ACGTACATTT CCTAAACCCT
GAGGATGAGG TTTATAGACG AATTATTATG GCTGCGAAAG GGTTTTCTGA TGCAGATAAC
CAGGCACCGC TTTATTTTAG AACAACGGAA GAGATGTTAG AGGAATTTAG CTATCTTGGG
AAAGAAAAAG CGGAAGAAGT TGTAATAACG AATACAAATA AAGTTTGTGA TATGATTGAA
AAGATATCGC CAGTCCGCCC GGATAAATGC GCTCCAGTCA TTGAAGATTC GGATAAGACA
CTTCGTGATA TTTGTTATGA GAAAGCTCAT TCCATGTATG GCCCAGATCT TCCTAAAATT
GTAGCAGATC GATTGGAACA TGAGTTAAAG TCGATTATCA ACAATGGTTT CGCCGTAATG
TATATCATTG CTCAAAAGCT GGTATGGAAG TCGAATGAGG ATGGTTATCT GGTTGGTTCC
CGTGGTTCTG TCGGTTCTTC CTTTGCAGCT ACGATGTCGG GTATCACAGA GGTAAATCCA
CTTCCAGCGC ATTACTACTG CCCGAATTGT CATTTTTCTG ATTTTGAATC AGAGGAAGTA
AAAGCGTTTG GTTCCAGTTC GGGTTGTGAC ATGCCAGATC GTGATTGTCC TGTTTGTGGT
CAGCCATTAG CTAAGGATGG ACATAACATA CCGTTCGAAA CGTTCCTTGG GTTTAACGGA
GATAAGGAAC CAGATATCGA TCTTAACTTC TCTGGAGAGT ATCAGAGTAA GGCACATGAT
TATACCGAAG TTATCTTCGG TAAGGGACAG ACCTTCCGTG CCGGTACCAT TGGTACCCTT
GCAGATAAAA CAGCATTTGG TTATGCCAAG AAGTATTATG AAGAGAAGAG TGTGCATAAG
AGGGTTGCTG AGATTAACCG TATAGTTGAA GGTTGTGTTG GGGTACGAAG AACGACAGGA
CAGCATCCTG GTGGTATTAT CGTTTTACCA TTAGGAGAAG AAATTTACTC ATTTACTCCG
GTACAGCGTC CTGCTAATGA TATGACAACG AAGACCGTTA CGACTCACTT TGATTACCAC
TCCATTGACC ATAACTTACT TAAACTTGAT ATTCTTGGGC ACGACGATCC TACCATGATT
CGTATGCTTG AAGATTTGAC AGGAATTGAT GCGAAAACGA TCCGAATGGA CGATCAGAAG
GTCATCTCTT TGTTTAAATC AACAGAAAGC TTAGGAATAA GACCAGAAGA TATCGGTGGC
TGTGACCTTG GTAGCCTAGG CCTTCCGGAG CTTGGTACTG ACTTCGTTAT GCAGATGTTA
CGAGACACGA AGCCACAGAG TTTTTCGGAT ATGATTCGTA TATCTGGTCT TTCCCACGGT
ACTGACGTAT GGTTGAATAA TACCCAAACG TTGATTTCAG AAGGAAAGTG TACCCTTTCT
ACAGCAATTT GTACCCGTGA CGATATTATG ACTTATCTGA TTAGTGAAGG CGTTGAGAAT
GGACTTGCTT TTAAGATCAT GGAGAGTGTT CGTAAAGGAA AAGGGCTTAC TCCGGAGATG
GAGGAAGCGA TGGTTGCAAA TGGAGTACCA GATTGGTATA TCTGGTCATG TAAGCGTATT
AAGTACATGT TCCCAAAGGC ACATGCCTGC GCGTATGTCA TGATGGCGTT TCGTATTGCT
TACTTTAAAG TGTATTATCC GCTTGCTTAT TATACTGCTT ACTTTAGTAT CCGTGCCACA
GCATTTAACT ATGAATTAAT GTGTCTTGGA AGGGAACGTC TTGATTATCA TATGGCGGAA
TATAAACGTC GTATGGGATC AAATGACCCC GCACAGAAGT TAACGAAGAA AGAAGAAGAT
ACCCTAAAGG ATATGAAAGT AGTTCAGGAG ATGTACGCTA GAGGTTTTGA TTTCTTACCA
ATTGATGTCT ATACAGCAAA GGCACATCAT TTTCAGATTA TTGATGGTAA ATTAATGCCA
GCATTAAGTA CCATCGATGG ACTTGGAGAT AAGGCTGCGG ATCAGGTAGT CGAAGCTGTC
AAGGATGGAA AATTCCTATC AAGAGATGAT TTTAAGACAA GATGTAAAAT CAGTGGAACA
GTAGTTGATC TGATGGGTGA TTTAGGGTTA TTAGGTGATT TACCAATGAC GAATCAGATC
TCCCTTATGG ATTTTCTTAT GTAA
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| Protein sequence | MDVIMLFFEV FDTLNVEKEI YELFSDISVL KALVSKNNGN VHIYIQSTHL ISRKQIKMME
FQLQKQLFSS TKSRVKLIET YQLSSQYTPE SLWNMHSDNI LEELNDSSVM NYNILRMAEI
SFDGYKMIFK LPDTFLNQKK SEEIKVFLEP MFEQRFCIPV DIRFEFYELI EEAKEEEEYP
QARREKAKQN ASGSMETSGE VSDEIRAEIP FELSSSNVDG NNLAGKDSIE SKSELNVEKK
KEEKKQIKDD KFSQSDKKNS AYDKAKAYKK KLPDDPDIIY GRPFEGDSIP IKDIQEEIGE
VVIRGKILFT EERELRNEKF LISFNVTDFT DTISAKIFVR TEEIEDIRGQ IKKGMFIRLK
GMALYDTYSR EITINSIIGI KKIPSFIEKR VDRYENKRVE LHAHTMMSDM DAVVDPQALV
KTAFEWGHKA VAITDHGVVQ AFPEASHAIN PKDYKDDEEK MQRAKDFKII YGMEAYVVDD
MKDIVQGECG QGIEDTCVVF DIETTGFSSV KDKIIEIGAV KIQHGTIVDR FSTFINPEVP
IPYHIQKLTS ITDEMVIGSR TIEEILPEFL SFCEGCYLVA HNASFDIGFI TKKAEFLNIP
LTVTSVDTVG LARVLLNHLN NFKLDTVAKA LSISLENHHR AVDDAGCTAE IYLKFLEMLR
ERGIETLAQI NRAEEVTPDV IKKMPTYHAI ILCQNDIGRV NLYRMVSYSH INYFQRRPRI
PKSVLMKHRE GLLIGSACEA GELYQAILRN SSEGEIVRLA NFYDYYEIQP LGNNQFMIES
EKIDISSEEE LKEINRKIIA LGEEYNKPVV ATCDVHFLNP EDEVYRRIIM AAKGFSDADN
QAPLYFRTTE EMLEEFSYLG KEKAEEVVIT NTNKVCDMIE KISPVRPDKC APVIEDSDKT
LRDICYEKAH SMYGPDLPKI VADRLEHELK SIINNGFAVM YIIAQKLVWK SNEDGYLVGS
RGSVGSSFAA TMSGITEVNP LPAHYYCPNC HFSDFESEEV KAFGSSSGCD MPDRDCPVCG
QPLAKDGHNI PFETFLGFNG DKEPDIDLNF SGEYQSKAHD YTEVIFGKGQ TFRAGTIGTL
ADKTAFGYAK KYYEEKSVHK RVAEINRIVE GCVGVRRTTG QHPGGIIVLP LGEEIYSFTP
VQRPANDMTT KTVTTHFDYH SIDHNLLKLD ILGHDDPTMI RMLEDLTGID AKTIRMDDQK
VISLFKSTES LGIRPEDIGG CDLGSLGLPE LGTDFVMQML RDTKPQSFSD MIRISGLSHG
TDVWLNNTQT LISEGKCTLS TAICTRDDIM TYLISEGVEN GLAFKIMESV RKGKGLTPEM
EEAMVANGVP DWYIWSCKRI KYMFPKAHAC AYVMMAFRIA YFKVYYPLAY YTAYFSIRAT
AFNYELMCLG RERLDYHMAE YKRRMGSNDP AQKLTKKEED TLKDMKVVQE MYARGFDFLP
IDVYTAKAHH FQIIDGKLMP ALSTIDGLGD KAADQVVEAV KDGKFLSRDD FKTRCKISGT
VVDLMGDLGL LGDLPMTNQI SLMDFLM
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