Gene Cphy_2511 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_2511 
Symbol 
ID5742582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp3083993 
End bp3085870 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content38% 
IMG OID641293601 
Productdeoxyxylulose-5-phosphate synthase 
Protein accessionYP_001559611 
Protein GI160880643 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.465086 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCAAAGA TACTGGATGA AATAAATCAA CCAAATGACA TTAAAAAAAT AAGTGCAAAA 
AAGTATACCC AGCTGGCAGC AGAAATCAGA AGGTTTTTAA TCGCAAATGT GAGTAAAACG
GGAGGACATC TTGCATCAAA TTTAGGTGTT GTTGAACTTA CAATGGCGCT TCACTTGTTT
TTGGATTTTC CAGAGGATAA GCTTGTATGG GATGTTGGCC ATCAAGCATA TGTTCATAAA
TTATTAACAG GAAGAAAGAA TGACTTTAAG ACATTACGTC AATATGAAGG AATGAGTGGA
TTTCCAAAAC GTAAGGAGAG CGATTGTGAT GCATTTGACA CTGGACATAG CTCTACGTCT
CTTTCTGTTG CAGTAGGTTT AGTTAAGGCA AGGGAGCTTT CTGAGGAACA GCGCAAAGTG
GTTGCTGTAA TTGGTGATGG GGCCCTTTCT GGTGGTATGG CATTTGAGGC ACTGAATAAT
GCTGGCCGAT TAAAAGAAAA CATGATTATC GTATTAAATG ATAATAATAT GTCCATATCA
GAAAATGTTG GTGGGATGTC AAACTATTTA GGTAAGGCGA GGACAAATTA CCGATACATG
GATTTTAAAG GTGGCTTAGA GACAGCCTTA AAGAAAATTC CGAAGGTTGG CGATGCAATT
GTTACAACAT TAAAACAATC GAAAGATTCC CTAAAGCATC TGTTTATTCC AGGAATGTTA
TTTGAAGATA TGGGAATGAC GTACATTGGG CCAATTGATG GTCATAATAT CAATCAAATG
TTAACAGCAC TGAAGTCTGC ATCCAGAGTG AATGGTGCTG TATTAATCCA TACGGTAACA
AAAAAAGGAA AGGGATACGA ACCTGCGGAA AAAGAGCCAA GCAAATATCA TGGTGTAGAA
CCATTTGATA TTAAAACAGG GAAAAAACTT AAAATAAATT CCGAAGTTTC TTATACTGAA
GTCTTTGGTA AGAAGTTAAT AGAGCTTGCT AAAGTCCGTA ATGATGTGGT AGCAATAACA
GCTGCGATGC CAGACGGTAC TGGTTTAACC GCATTTGGAG ATGTATTCCC AAATCGATTT
TTTGATGTTG GAATTGCAGA AGAACATGCC GTAACTTTTG CGGCAGGATT AGCAGCAGCA
GGGTTTAAAC CAGTAGTTGC TGTATACTCT ACATTTTTAC AGCGAGCTTA TGATCAGATA
CTTCATGATG TATGCGTTGG TAAGTTACCA GTTGTTTTTG CACTAGATCG CGCAGGAATT
GTAGGAAATG ATGGAGAAAC TCACCAAGGT ATGTTTGATT TATCGTATCT ATCCCATATG
CCAGGGCTTA CGGTAATTGC ACCTAAGAAT TCATGGGAAT TTGAACGGAT GTTAGAATAT
TGTATTGATT TTGATGGTCC GATTGCAATC AGATATCCAA AAAATACAGC GTATCTAGGG
TTAGAAGATC ATAAAAAAGA AATAATCTAT GGAAAGGGTG AGTTAATCGC TTCCGAAGAA
GAAATCGCTC TTATTGCCAT TGGTAGTATG GTGGAAACCG CTGTTTTAGT AAGGGAGCAT
TTGCATAAAC TTGGGCTTAA GGCAACTTTA GTTAATGCAA GATTTATCTC TCCATTGGAT
GAAGAGATGC TTCATCAACT AACGAAATCG CATACTTTAT TTGTGACGAT GGAGGAGAAT
GTTAAGCGCG GCGGATTTGG AGAAGAAGTA TCGGTGTTCT TATGTGAGCA TGATTATCAA
GGAATAAAGC ACCTTAATAT TTCCATACCG AATATGTTTG TAGAGCATGG AGATCGTACG
CTTTTAAAAG AAAAATTAGG GCTTGATGCA GAATCCATTG TAGATAAAAT TTGTAGACAA
AGAGGGATGC AGAAATGA
 
Protein sequence
MPKILDEINQ PNDIKKISAK KYTQLAAEIR RFLIANVSKT GGHLASNLGV VELTMALHLF 
LDFPEDKLVW DVGHQAYVHK LLTGRKNDFK TLRQYEGMSG FPKRKESDCD AFDTGHSSTS
LSVAVGLVKA RELSEEQRKV VAVIGDGALS GGMAFEALNN AGRLKENMII VLNDNNMSIS
ENVGGMSNYL GKARTNYRYM DFKGGLETAL KKIPKVGDAI VTTLKQSKDS LKHLFIPGML
FEDMGMTYIG PIDGHNINQM LTALKSASRV NGAVLIHTVT KKGKGYEPAE KEPSKYHGVE
PFDIKTGKKL KINSEVSYTE VFGKKLIELA KVRNDVVAIT AAMPDGTGLT AFGDVFPNRF
FDVGIAEEHA VTFAAGLAAA GFKPVVAVYS TFLQRAYDQI LHDVCVGKLP VVFALDRAGI
VGNDGETHQG MFDLSYLSHM PGLTVIAPKN SWEFERMLEY CIDFDGPIAI RYPKNTAYLG
LEDHKKEIIY GKGELIASEE EIALIAIGSM VETAVLVREH LHKLGLKATL VNARFISPLD
EEMLHQLTKS HTLFVTMEEN VKRGGFGEEV SVFLCEHDYQ GIKHLNISIP NMFVEHGDRT
LLKEKLGLDA ESIVDKICRQ RGMQK