Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_2404 |
Symbol | |
ID | 5742474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | - |
Start bp | 2959258 |
End bp | 2960580 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 641293494 |
Product | MATE efflux family protein |
Protein accession | YP_001559504 |
Protein GI | 160880536 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000448098 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAAT TAGATTTAAA GAAGGATTCA ACGAGAAAGT TATTTTTCCG CTATTTATTA CCATCAATAA GTGCGACATT AGTTACTTCA ATTTATATTC TCGCTGATTC TATTATGATA GGTAAAGGAG TAGGTCCAGA AGGAATCGCT GCTCTAAATA TCGTGTTACC ACTTTTTACG CTATTTTTTG GTACCGGTTT ATTATTTGGA GTTGGCGGTT CGGTTTTAAT GTCAATTGCA AATGGAAGTA ACGATTCGTT ACTTGGAAAG CAGTATTTTA CGACCTCGGT ATTATCGGTA ACTTTTATAT CCATATTTCT ATTGATTATC ATGCAACTTG GGTTTAAACC GATCTTATAT TTCTTAGGAG CTACCGATGT AACATTTACA CTCGCTAGTG AGTATGGAAG AACATTAGTG GCGGGTGCTC CTGTTTTTAT GTTTTCTGCT TTGCTTCAAG CTTTTATACG AAATGATAAA GACCCTAATT TATCGATGAT TGGTGTAATT ACAGGTGGTG TTACTAATAT CATCTTAGAC TATATCTTTA TCTATATATT TCACTGGGGA ATGTTCGGCG GAGCAATCGC TACAGTAATC GGAAGTTCGA TTACTTGCTT GATCTTGATA GTTCATTTTT TTAAGAAAAC AAATCAGTTA AAGCTAGTAA AGAATGGATT TTCGATGAAA CGATTTTCTA AAGTAGTAAC CAGTGGACTA GCCAGCTTTT TAATTGAAAT CTCGAATGGT ATTGTTACAT TCCTCTTTAA TATTCAACTT GTAAAATACA TTGGAGACAT CGGTATCACT GTTTATAGTA TTATTGCAAA CAGTTCTTTT ATTGTGATGT CCTTAGCAAA TGGTGTTGCG CAGGCATCAC AGCCTATACT TGCAATTAAC TTTGGAGCAG GGGAAAGAAA GCGTGTAGAT GAAGTTAAGC ACTTAGGGTT TATTACAACT ACAATAATTG GATCAATTAT CGTTGCGCTA GGTGCCTTAT TCCCAGGAGT TATTACAGGA TTGTTTGTAC ATGCAACAGA TGAAATATTG TCATTAGCAA TTCCTGCCAT TAGAATGTAT ATTTTAGCAT TCTTATTTAT GAACCTGAAT ATTTTTATAA GCGGTTATTT CCAAGCAGTA ATGAAGCCAC AATACGCAAT GGGGGTCAAT CTTTTACGAG GTTTAATATT AGGCAGTGCA TTTGTATTAA TCTTGCCATT GTTTATAGGA GCAAATGGTA TCTGGATTTC GATGCCTATT GTAGAAACAA TTTCATTTGC AGTTGCTTTG GCTTTAAATT ATAAAATGAA AAAAGTAATA TAA
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Protein sequence | MKQLDLKKDS TRKLFFRYLL PSISATLVTS IYILADSIMI GKGVGPEGIA ALNIVLPLFT LFFGTGLLFG VGGSVLMSIA NGSNDSLLGK QYFTTSVLSV TFISIFLLII MQLGFKPILY FLGATDVTFT LASEYGRTLV AGAPVFMFSA LLQAFIRNDK DPNLSMIGVI TGGVTNIILD YIFIYIFHWG MFGGAIATVI GSSITCLILI VHFFKKTNQL KLVKNGFSMK RFSKVVTSGL ASFLIEISNG IVTFLFNIQL VKYIGDIGIT VYSIIANSSF IVMSLANGVA QASQPILAIN FGAGERKRVD EVKHLGFITT TIIGSIIVAL GALFPGVITG LFVHATDEIL SLAIPAIRMY ILAFLFMNLN IFISGYFQAV MKPQYAMGVN LLRGLILGSA FVLILPLFIG ANGIWISMPI VETISFAVAL ALNYKMKKVI
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