| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2344 |
|---|
| Symbol | |
|---|
| ID | 5745403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 2891543 |
|---|
| End bp | 2893270 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641293434 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_001559444 |
|---|
| Protein GI | 160880476 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.520603 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAGA AAATTTTATT GTTAAGCTGT CTTATTATTG TCCTGTTAGC GGCAAGCGCA
TGTAAAAAGG CTGATGTAAA TCAGAATCCG TCTGAATTAA ATCAGGATGA AAGTCAAAAG
GAAAAGGAAG AAAACGATGA TGAAGGCACA CCGGAAGTGT CTCAGGATGA AACTAAGGCA
GTTATTCCTT ATGACTATGT ACAGAATTTA AATATAATTG ATGATAACTA CCGTAATTTT
TATGAAATAT TCGTTTACTC TTTTTATGAC AGCAACGGTG ACGGCATTGG AGATATTAAT
GGTGTTATAT CAAAATTAGA CTATATTAAT GATGGCAATG ATGCGACCGA TTCAGATCTA
GGCTTTAACG GGATTTGGCT AATGCCTATC ATGCCATCAA CCACATATCA CAAATATGAC
GTAACGGACT ATTACAATAT TGATCCACAG TACGGGACAT TAGAGGATTT TAAAAATCTG
GTTTCTGAAT GTCATAAACG TGGAATTCAT TTAATTATCG ACTTTGTATT CAATCACACC
TCGGCAAAAC ATCCTTGGTT TTTAGAAGCG GTTTCCTATC TGGAAAGCTT GAAGGAGGGA
GAAGAGCCTG ATTTAGAAAA ATGTCCATAT GTAGGATACT ATCATTTTAC GAAAGATTAT
AACGGTAGTA AAACTTACTA TAAGGCAGGA ACTTCAAATT GGTATTACGA AGGTGTCTTC
TGGGATCAGA TGCCGGATTT AGCTCTGGAA AATGAAAATG TCAGAAAAGA AATTGAGGAT
ATAGCTAAAT ATTGGCTTGA CCTTGGTGTA GACGGATTCC GCTTGGATGC AGCGAAAGAG
TATTTTTCCG GTGAAAAAGA AAGAAATATT GAAGTTCTTA AGTGGTTTTC GGATTATGTA
AAAAGTGTGA AAGAGGATGC CGACATTGTT GCGGAAGTAT GGGATGAAGA GGGTACTATA
GCAGCTTATT ATGAAAGCGG AATTCCAAGT TTATTTAACT TCCCACTTTC CCAACACAAT
GGATTAATTA CAAACACAGC CAGAAAATTG GGTACTTCTT CTGGTAAAAA CTTTGCTAAA
ACTTTACTTC GTTTAGATGA GAAGTATAAG GAGGGTAATC CTAAATATAT AGATGCTCCG
TTTATTAGTA ATCATGATAC CACAAGAATA TCTGCCCAAT GTGTCAATGA TGAAGATCAA
ATGAAAATGT CAGCAGGTAT GTTATTGACC ATGAATGGCA GCCCATATGT CTATTATGGA
GAAGAGATTG GTATGAATAG TAAGGGAACC AAGGATGAGA ATAAAAGATT GCCTATGCAG
TGGTCAGCTA CAGATACTAC GGGAATTACT ACACCACCAG CTAATGCAGA TTCTGTAGAG
CAGAAGTTCC CTCCTGTCGA TGAGCAAATG AAAGATCCTC TATCCCTTTA TAACTACTAT
AAGAGAGCAG TTAGAATCCG TAATGAGAAC CCAGAGATTG CAAGAGGAGA TATGAGTGTA
ATTGAAGAAT TATGCACAAA GGACATCAGT GCAATTAAAA AGGTATACCA AGGCAGTGAA
ATTGTGATTC TTTATAATAT TAATACAGAA TCAGCCAACA TATTGTTAAA AGATGCAGGT
CTTACGGAGT TAAATATCAG AGGATACTTA TCAGTGGATG GAAATGCAGT TACCATGTCA
GATGGTGTTG TTTCAATGCC TAAGTATTCG ATAGTTATAT TAAAATAA
|
|---|
| Protein sequence | MRKKILLLSC LIIVLLAASA CKKADVNQNP SELNQDESQK EKEENDDEGT PEVSQDETKA
VIPYDYVQNL NIIDDNYRNF YEIFVYSFYD SNGDGIGDIN GVISKLDYIN DGNDATDSDL
GFNGIWLMPI MPSTTYHKYD VTDYYNIDPQ YGTLEDFKNL VSECHKRGIH LIIDFVFNHT
SAKHPWFLEA VSYLESLKEG EEPDLEKCPY VGYYHFTKDY NGSKTYYKAG TSNWYYEGVF
WDQMPDLALE NENVRKEIED IAKYWLDLGV DGFRLDAAKE YFSGEKERNI EVLKWFSDYV
KSVKEDADIV AEVWDEEGTI AAYYESGIPS LFNFPLSQHN GLITNTARKL GTSSGKNFAK
TLLRLDEKYK EGNPKYIDAP FISNHDTTRI SAQCVNDEDQ MKMSAGMLLT MNGSPYVYYG
EEIGMNSKGT KDENKRLPMQ WSATDTTGIT TPPANADSVE QKFPPVDEQM KDPLSLYNYY
KRAVRIRNEN PEIARGDMSV IEELCTKDIS AIKKVYQGSE IVILYNINTE SANILLKDAG
LTELNIRGYL SVDGNAVTMS DGVVSMPKYS IVILK
|
|---|
| |