| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2108 |
|---|
| Symbol | |
|---|
| ID | 5744114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 2605495 |
|---|
| End bp | 2607915 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641293203 |
|---|
| Product | endo-1,4-beta-xylanase |
|---|
| Protein accession | YP_001559213 |
|---|
| Protein GI | 160880245 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3693] Beta-1,4-xylanase |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAA AAGTAATAGC TTTATTAACA TGTGTTATGC TTTCGCTTAC GCTGATTCCG
GGTATCGGCA TAAAGAGCAC TGCACAAGCC GCTGAAACCA ACATCTATAA AGTAGATTGG
AGCAAATTTA ATGAGGGTGA CAAAATCAGC GGTCCCATGG AGGGTTTAGG TAGATCAGGC
GGAGCAGATA TCACGGTTAC GGGCTCCTCT ACCAAATCAT TTTACATATC TAATCGTAAA
GATAACTGGG ATGCACTTGA TATTCAGAAC GATCTTTTGA AGTTAGATCG AGATGCAACC
TATGAAATCA CAGTTACCGG TCATGTTGAC AGCAATGTAG ATACTAAGAA TGCTAGTGTC
AAGCTTGGCG GTGTAACAAG GAAAACGGGC GAGGATGATG GATACCCAGA GTTCAAAAAA
GAGAAACTAC AATCGGGCAA GAGTTTTGTA CTAACCTATG AACTTAAACT TTCTGATCAA
ATTCCGGACG CTTCAAGAAA TCTGTGGGTG CTCCGTGTTC AGACCGACGA ACCAAGCGGA
AGTAGGGCCG GAGATCTTGT ACCGTTCTAT GTGGATGATA TCGTGATTAT TCAAACAAAG
GCATCCACTG CTCCTGTAGC TGTGACTGGT GACCTTATGT CACTTTACGA ACTTAATGCG
GACAAAACTC TCAAGGTTGG AGAATCATTA TCAAGTCCAG CTCTGAAAGT TTCTGGTAAT
GCTAAGATAG TTGTTGTAGA AGGCACCGAT GGTACCGTGT CATTACAACT GAAAGACCGT
GTTAATAATT ATGACGGTGT AGACATCCTT CGTGATGCAC TGAAAATAAA CGATAAATTT
ATGTCTGGTA CATACACGAT TGAGGTAAAA GGCCATGTAG AGGATGGTTC TGATTTAAGT
AAATCCCAGT TTGTTATGGG TATGACCGAA TCTCCATGGG GCGAACTCAC TTCAAGAGTG
ACGCCAAGTA GTGACGGTAG CTTTGTAATA ACTTATACCA AAGCATACAC CGGAAGTGAA
TTGACAGGCC TAGGTTATAG CTACCGAGTT CAGACACCTC CAAGCGTTCT CACATCGTTT
TATATCGATA ACATTACCGT TACGGTTCAG GGAGCTGAAG AAGAAGATGA GTCAACTGTG
GTTATACCTG AATGGGATTT AACCCTTGAT TCCATTAAAG ATGCATACGC TGATTACTTC
ATGATAGGTA ATATTATGGA ACCAGGTCAG ATACAGGATA CAGAAACCAC CGAAATGTTT
AAGCATCATT ATAATGTTGT TACCGCAGAA AATGCCATGA AACCAGGGAA TATTTCCAAG
GTAAAAGGCG AATACAATTT TGACAATGCT GATAAGCTTG TTACGTGGGC TAAAGAAAAT
GGTTTAAAAG TCCACGGTCA TACTTTAGTT TGGCACTCTC AGTCAGCTCC ATGGTTGACT
ACAAATGCGG ATGGAACACC TCTAACACGT GCAGAAGCAA GAGCTAATAT GGAAGATTAT
ATTAAGAACG TTGCAGGACA TTACGCAGGG AAGGTGATTT CATGGGATGT ATTAAATGAA
GCATTTTTGC CAGGTGTATC CGAAATCCCT GCTGGCTGGA GGGATGTATT ACGCAAATTT
GAAGATAACG GAAATGGTTC TCCTTGGTAT CAAGCCTATG AAAACGGTGC TGATAAGAGC
AAGGGCGAGG ATGGCTCTGA TTATATCTAT GACGCTTTCG TGTTTACACG TCTTGCCGCT
CCTGATGCAG TGCTGTATTA TAACGACTTC AATGAGACAG AGGCAGGTAA GTGTGAAGCG
ATCGCCTTGA TGGTGGAAGA ATTAAACACA AAGTGGAAGA CCGATAAACG GAACACTGAG
CCTGACAGAT TGCTCATCGA AGGAATCGGA ATGCAGGCAC ATTATTGGAC CGGAGATTTA
AAGGTTTCCA CTGTAGAAGC TAGCATCAAG CGTTTCATAA AAACAGGTGC TAAGATCAGT
GTATCTGAGC TGGATGTTCC TCATGGCGAT TACATGACCT ACAAGCAACG TACTGACTCT
CCTACAAAGG AAGAAGAGAA ACTTCAGGCG GATTTATACA AGCAGTTGTT TGAAGTATAC
AAAAAATATG CGGACAACAT CGAACGTGTC ACCTTCTGGG GTAAAACAGA TCCTCAAAGC
TGGCGTTTCC AAGGTTATCC ATTACTGTTT GATAAAAATT TTGCTCCAAA GGACGCATTC
TTTGCTGTAA TTGATGTAGC AAAGGAAAAG GTAGCAGAGG AAAAGGCTGT TGAAACCATA
CCTGGTAAAG ATATCCCGAA AACAGGGGAA GACAGCAGTA AGCAAATGAT TTTGACTGCA
GTAGCTATTC TGATTATATT GGTATTCGTA CCAGTTACGA TCTTAACAAA ACGAAGAGAG
AAGAATATAA AGAATATATA A
|
|---|
| Protein sequence | MGKKVIALLT CVMLSLTLIP GIGIKSTAQA AETNIYKVDW SKFNEGDKIS GPMEGLGRSG
GADITVTGSS TKSFYISNRK DNWDALDIQN DLLKLDRDAT YEITVTGHVD SNVDTKNASV
KLGGVTRKTG EDDGYPEFKK EKLQSGKSFV LTYELKLSDQ IPDASRNLWV LRVQTDEPSG
SRAGDLVPFY VDDIVIIQTK ASTAPVAVTG DLMSLYELNA DKTLKVGESL SSPALKVSGN
AKIVVVEGTD GTVSLQLKDR VNNYDGVDIL RDALKINDKF MSGTYTIEVK GHVEDGSDLS
KSQFVMGMTE SPWGELTSRV TPSSDGSFVI TYTKAYTGSE LTGLGYSYRV QTPPSVLTSF
YIDNITVTVQ GAEEEDESTV VIPEWDLTLD SIKDAYADYF MIGNIMEPGQ IQDTETTEMF
KHHYNVVTAE NAMKPGNISK VKGEYNFDNA DKLVTWAKEN GLKVHGHTLV WHSQSAPWLT
TNADGTPLTR AEARANMEDY IKNVAGHYAG KVISWDVLNE AFLPGVSEIP AGWRDVLRKF
EDNGNGSPWY QAYENGADKS KGEDGSDYIY DAFVFTRLAA PDAVLYYNDF NETEAGKCEA
IALMVEELNT KWKTDKRNTE PDRLLIEGIG MQAHYWTGDL KVSTVEASIK RFIKTGAKIS
VSELDVPHGD YMTYKQRTDS PTKEEEKLQA DLYKQLFEVY KKYADNIERV TFWGKTDPQS
WRFQGYPLLF DKNFAPKDAF FAVIDVAKEK VAEEKAVETI PGKDIPKTGE DSSKQMILTA
VAILIILVFV PVTILTKRRE KNIKNI
|
|---|
| |