Gene Cphy_2025 details

Gene Information

• Locus tag: Cphy_2025
• ID: 5743053
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 2500417
• End bp: 2502339
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 641293122
• Product: glycoside hydrolase family protein
• Protein accession: YP_001559132
• Protein GI: 160880164
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3250] Beta-galactosidase/beta-glucuronidase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00409776
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGCAG ATTTAACATG GTTGGATAAC CCAGAAGTGT TTCGTGTCAA TCAGTTAGCA 
GCTCACAGTG ATCACCCTTT TTACAAGAGT AAGGAGGAGA TGGAACTAAG TACTTCCGAG 
GTTCCCTTTA GTCAGAATTT TACCGAGAAA AACTCCTTAC TACAATCGTT AAATGGTACG 
TGGCAGTTTC GATATTCTGT GAGTGCAAAA GAAAGACCAG AGTATTTTTA TCAAGAAGAT 
TTTATCGGAA GCGACTTCGA TGAAATTGCG GTTCCATGTC ATATTGAGTT AGCAGGTTAT 
GATAAAATAC ATTATATTAA TACGATGTAT CCATGGGAAG GCCATTACTA TCGAAGACCG 
GCGTATTGTT TAGGAAATGA TAGTTTGAGA GGAACCTTTA GTGAGGCTTC TTATAATCCG 
GTTGGATCTT ATCGGAAACG CTTTGATATA GAGAAAGGCT TACTTGGAAA AAGAGTGTGC 
ATAAGTTTTG AAGGCGTAGA ACAAGCAATG TATATCTGGT TAAATGGGCA ATTTATTGGT 
TATGCAGAAG ATAGTTTTAC CCCTTCCGAA TTTGATTTAA CACCTTACAT AAAGGAAAAA 
GATAATATTT TAGCGGTAGA AGTTCATAAA AGAAGTACGG CCGCTTTTCT TGAAGATCAG 
GATTTCTTCC GATTCTTTGG TATCTTTCGA AATGTTACCT TGTATGCAAA ACCTGAGATA 
CATATTGAAG ATATGTGGGT TAAACCACAA TTAAATGAAG ATAACTCTTC AGGAAAACTT 
GGACTTGAGT TAAAGATATC GAATCGGATT GAATTAGGGA CGATAACACT TAAGGTTCAA 
GATGATAATC ATAAAATTAT ACTTGAAAAA AGCATAGAAG CGAAAGAAAA AGTTAGTTAT 
GAATCAAATG TAATAGAGAA TATTATTCCT TGGTCATATA AAAATCCATA TTTATATACG 
GTAAATCTTG AAGTATATGA TAACAGTGGA TGCTTAGTTG AAATTGTACC ATATAGAATA 
GGATTTCGAA GGATTGAAAT CAAGGATAAA CTTATACTTC TCAATGGAAA ACGACTAATA 
ATTAATGGTG TGAACCGCCA TGAGTGGAGT CAGACCAGTG GAAGATGTAT TAATTTATCT 
GATATGCAGA CAGATATGAA ACTGATTCTT CAAAATAATA TTAATGCTGT TCGTACCAGC 
CATTATCCAA ATCAGATACC TTGGTATTAT CTTTGTGATG TTAGTGGCAT CTATGTCATG 
TCTGAGACGA ACTTAGAATC TCATGGCTCA TGGCAAAAGT TGGGAGCTAT AGAACCTTCT 
TGGAATATGC CGGGTAGTAT TCTACAGTGG AAAGAAGCCG TAGTTGACCG TGCGAGAACT 
AATTTTGAAA CCTTTAAGAA TCATACCTCA ATACTATTTT GGTCCCTAGG GAATGAATCC 
TATGCAGGAG ATAATATCGA GAGTATGAAT CAATTCTTTA AAGAAAATGA TGCTAGTAGA 
CTTGTACATT ATGAAGGAGT AGTGAATAAC AGAGCTTATG AATCTACTAT ATCCGATGTA 
GAGAGCCGTA TGTATGCGTC TTCTAAACAA ATAGAAGAAT ATTTGGAATC AGATCCAGCA 
AAACCTTTTA TTTTATGCGA ATATATGCAT GATATGGGAA ATTCTTTGGG TGGGCTGAAA 
TCATATATTG ACTTGATACC TCGTTATGAG ATGTATCAAG GTGGATTTAT TTGGGATTTT 
ATCGATCAAG CATTATTAGT AAAGGATGAG ATATCAGGTG AGATGGTACT TCGATACGGA 
GGAGACTTCG ATGACAGACC TTCTGACTAT GAATTCTCAG GAGATGGAAT CGTATTTGCA 
GATAGAACAG AAAAACCATC AGTACAGGAG GTGAAATATT ACTATGGATT GTATCAATCA 
TAA 

 

Protein sequence

MKADLTWLDN PEVFRVNQLA AHSDHPFYKS KEEMELSTSE VPFSQNFTEK NSLLQSLNGT 
WQFRYSVSAK ERPEYFYQED FIGSDFDEIA VPCHIELAGY DKIHYINTMY PWEGHYYRRP 
AYCLGNDSLR GTFSEASYNP VGSYRKRFDI EKGLLGKRVC ISFEGVEQAM YIWLNGQFIG 
YAEDSFTPSE FDLTPYIKEK DNILAVEVHK RSTAAFLEDQ DFFRFFGIFR NVTLYAKPEI 
HIEDMWVKPQ LNEDNSSGKL GLELKISNRI ELGTITLKVQ DDNHKIILEK SIEAKEKVSY 
ESNVIENIIP WSYKNPYLYT VNLEVYDNSG CLVEIVPYRI GFRRIEIKDK LILLNGKRLI 
INGVNRHEWS QTSGRCINLS DMQTDMKLIL QNNINAVRTS HYPNQIPWYY LCDVSGIYVM 
SETNLESHGS WQKLGAIEPS WNMPGSILQW KEAVVDRART NFETFKNHTS ILFWSLGNES 
YAGDNIESMN QFFKENDASR LVHYEGVVNN RAYESTISDV ESRMYASSKQ IEEYLESDPA 
KPFILCEYMH DMGNSLGGLK SYIDLIPRYE MYQGGFIWDF IDQALLVKDE ISGEMVLRYG 
GDFDDRPSDY EFSGDGIVFA DRTEKPSVQE VKYYYGLYQS