Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_1884 |
Symbol | |
ID | 5744563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 2325318 |
End bp | 2326274 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 641292981 |
Product | dihydrouridine synthase DuS |
Protein accession | YP_001558992 |
Protein GI | 160880024 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000236711 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGTTTT ATTTTGCACC AATGGAGGGA GTGACCGGTT ATATTTATCG TAACATCCAT CACTCATATT TTCCTAATGT GGATAAGTAT TTTACTCCAT TTATTGTAGC TAATCAAAGT AATAGTTTTA AGACAAGAGA ATTACAGGAT ATTAAACCAG AACATAATCA AGGAATGTAT GTAGTTCCGC AAATATTGAC AAATAATGCT CAAGATTTTA TTCAGACTTC AAGGAAGATA GCAGAGTTTG GATATGACGA GATTAATTTA AATCTTGGTT GTCCATCTGG AACAGTAGTC GCAAAAGGAA AAGGTTCCGG ATTTTTAGTG ATGAAAGATG AGTTGAATCG TTTTCTAGAA GAAGTATTTC AGGCTAGTGT AACTAAAATC TCGATTAAGA CTAGAATTGG ACGTGATAAT CCAGAAGAGT TCCATGATTT GATGTCAATC TTTAACCAAT ATCCACTGGA GGAGTTAATC ATACATCCAA GAATTCAAAA AGACATGTAT AAGAATACTC CGAATCTACC AGTGTTTGCG GAAGGATTAC TTCTAAGCAA ACATGAGGTT TGTTATAACG GGGACATTTT TACTGTGGAT GATTATAAAA ATTTTATCGC TAATTTTCCA CAAGTGAAGG CAGTCATGCT TGGAAGAGGA ATTATTGCAA ACCCAGCTAT CATTCAAGAA ATAACTTTAG GAAAAGGTTT GGATAAGAGT ATTTTAAAAG AGTTTCATAG TCGACTCGTA ATAGATTACC AGCGGATTTT ATCAGGAGAC CGTGATGTGT TGTTTAAGAT GAAAGAAGTA TGGCATTACT GGTCTTTTAT ATTTACAAAT TCTGAGAAGT ATATAAAGAA GATTAGAAAA GCACAACGAA TATCAGATTA TGTACTAGCG GTTGAAAACT TATTCTACGA ACAAGAGATT AAAAAAGATG CGGGTTACAA TTCTTAA
|
Protein sequence | MKFYFAPMEG VTGYIYRNIH HSYFPNVDKY FTPFIVANQS NSFKTRELQD IKPEHNQGMY VVPQILTNNA QDFIQTSRKI AEFGYDEINL NLGCPSGTVV AKGKGSGFLV MKDELNRFLE EVFQASVTKI SIKTRIGRDN PEEFHDLMSI FNQYPLEELI IHPRIQKDMY KNTPNLPVFA EGLLLSKHEV CYNGDIFTVD DYKNFIANFP QVKAVMLGRG IIANPAIIQE ITLGKGLDKS ILKEFHSRLV IDYQRILSGD RDVLFKMKEV WHYWSFIFTN SEKYIKKIRK AQRISDYVLA VENLFYEQEI KKDAGYNS
|
| |