Gene Cphy_1884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_1884 
Symbol 
ID5744563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp2325318 
End bp2326274 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content33% 
IMG OID641292981 
Productdihydrouridine synthase DuS 
Protein accessionYP_001558992 
Protein GI160880024 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000236711 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTTT ATTTTGCACC AATGGAGGGA GTGACCGGTT ATATTTATCG TAACATCCAT 
CACTCATATT TTCCTAATGT GGATAAGTAT TTTACTCCAT TTATTGTAGC TAATCAAAGT
AATAGTTTTA AGACAAGAGA ATTACAGGAT ATTAAACCAG AACATAATCA AGGAATGTAT
GTAGTTCCGC AAATATTGAC AAATAATGCT CAAGATTTTA TTCAGACTTC AAGGAAGATA
GCAGAGTTTG GATATGACGA GATTAATTTA AATCTTGGTT GTCCATCTGG AACAGTAGTC
GCAAAAGGAA AAGGTTCCGG ATTTTTAGTG ATGAAAGATG AGTTGAATCG TTTTCTAGAA
GAAGTATTTC AGGCTAGTGT AACTAAAATC TCGATTAAGA CTAGAATTGG ACGTGATAAT
CCAGAAGAGT TCCATGATTT GATGTCAATC TTTAACCAAT ATCCACTGGA GGAGTTAATC
ATACATCCAA GAATTCAAAA AGACATGTAT AAGAATACTC CGAATCTACC AGTGTTTGCG
GAAGGATTAC TTCTAAGCAA ACATGAGGTT TGTTATAACG GGGACATTTT TACTGTGGAT
GATTATAAAA ATTTTATCGC TAATTTTCCA CAAGTGAAGG CAGTCATGCT TGGAAGAGGA
ATTATTGCAA ACCCAGCTAT CATTCAAGAA ATAACTTTAG GAAAAGGTTT GGATAAGAGT
ATTTTAAAAG AGTTTCATAG TCGACTCGTA ATAGATTACC AGCGGATTTT ATCAGGAGAC
CGTGATGTGT TGTTTAAGAT GAAAGAAGTA TGGCATTACT GGTCTTTTAT ATTTACAAAT
TCTGAGAAGT ATATAAAGAA GATTAGAAAA GCACAACGAA TATCAGATTA TGTACTAGCG
GTTGAAAACT TATTCTACGA ACAAGAGATT AAAAAAGATG CGGGTTACAA TTCTTAA
 
Protein sequence
MKFYFAPMEG VTGYIYRNIH HSYFPNVDKY FTPFIVANQS NSFKTRELQD IKPEHNQGMY 
VVPQILTNNA QDFIQTSRKI AEFGYDEINL NLGCPSGTVV AKGKGSGFLV MKDELNRFLE
EVFQASVTKI SIKTRIGRDN PEEFHDLMSI FNQYPLEELI IHPRIQKDMY KNTPNLPVFA
EGLLLSKHEV CYNGDIFTVD DYKNFIANFP QVKAVMLGRG IIANPAIIQE ITLGKGLDKS
ILKEFHSRLV IDYQRILSGD RDVLFKMKEV WHYWSFIFTN SEKYIKKIRK AQRISDYVLA
VENLFYEQEI KKDAGYNS