Gene Cphy_1547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_1547 
Symbol 
ID5744369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp1899632 
End bp1901068 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content35% 
IMG OID641292649 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001558660 
Protein GI160879692 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4209] ABC-type polysaccharide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000265018 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGTAA AAAAAGTTAC AAGTAGTCTT TATTTTATTC AGCGGATCAG TAGTCTCATA 
GGTGTGATTC TTCTATTCAT TCCTGCAATT AATCCTTCAC GGATTAGTGG ATTAATTGGT
AAAAATTTAT CTATTTTCAC CAGTGGATTT TTTTACTCTC GATTAACCCA GAATTTTGGG
AGAGCGTTTA GTAAGGGCTG GGTTGGGACA ATGACTACCC AAGTTTTATT TCTTTCTAGC
ATGATAGTCT GCATTGGATT TATTATTTGT GCAGCAGGTG CTTGCTTATC ACCGGGATGT
CTTAAGATGA AAAAGCAAGG TAATATACTA AGCGTTATTG GTACAGTACT TGCTTTAATA
GGAGCTTATG GAATTCGGTG GTCACAGATT GATATCAAAG GTACCTCCAA TCCAGATAAG
GTTCAGCCGA TGGAAAGCAA TGCCCTTCTA ATTTTTATTG TACTTACATT ACTTATTTTA
TTAACATCAC TCTTCTTATT AATTTTATTA CCAAAACCAG ATAAGAATGA AAAATACGAA
ATGGAAACCA AATACAAGTT ATTCCTATTA ATAATGCCGT TTCTTATTCT TTGCTTTGTA
TTTTCATATT TACCGTTGTT TGGATGGCGC TATGCTTTCT TTGATTACAA AGCAGGTGAT
TCCTTATCTT TGGATAATTT CGTTGGATTT AAGTGGTTTA CATATTTATT TCAAAATAAA
TCAACCAGAG GAGATATTGT AAGGGTTCTA AGAAACACTC TGGCTATGAG CGGTTTAGGG
CTAGCAACCA GCTGGTGCGC TATGGCATTT GCTATATTTT TATGTGAGAT TAAGAGTCTT
CGTTTACGAA GATTTATTCA AACCATTACA ACCATTCCTA ATTTTATTAG CTGGGTATTA
GTATTTGCGG TTGCCTTTTC TATCTTTTCT ACAGATGGTT TTTTAAGTTC TATCTTAATT
AAGTATGGTG TTATAGATAA TGGTGTGAAC TACTTAATGA GTAATAATCA TATGTGGTTA
AAGATGCTAG CATGGGGAAT GTGGAAGGGA CTTGGATGGA GTGCGATTAT ATATATTGCT
GCGATTTCAG GAATTGATCA GCAACTTTTT GAGGCAGCTA CGGTAGATGG AGCCGGAAGG
TTTCAAAGGA TGTGGCATAT TACGGTTCCT TCCTTGCTAC CAACATTCTT AGTACTACTT
GTTATGGCGA TTGCAGGTAT ATTAAGTAAT GGTATGGACC AATATTTAGT ATTTCAGAAT
GCCTACAATA CTGACACTGT TACAGTTCTT GATTTATATG TGTATAAATT AGGTATTAAC
AATGGTAAGA TTCCTCTTGC TACTGTAGTT GGTATGGCAA AATCCATTGT TAGTATTATC
TTGTTATTTG GCGCTAATAA AGTCTCAAAA ATAATTCGTG GCAACAGTAT AATATAA
 
Protein sequence
MKVKKVTSSL YFIQRISSLI GVILLFIPAI NPSRISGLIG KNLSIFTSGF FYSRLTQNFG 
RAFSKGWVGT MTTQVLFLSS MIVCIGFIIC AAGACLSPGC LKMKKQGNIL SVIGTVLALI
GAYGIRWSQI DIKGTSNPDK VQPMESNALL IFIVLTLLIL LTSLFLLILL PKPDKNEKYE
METKYKLFLL IMPFLILCFV FSYLPLFGWR YAFFDYKAGD SLSLDNFVGF KWFTYLFQNK
STRGDIVRVL RNTLAMSGLG LATSWCAMAF AIFLCEIKSL RLRRFIQTIT TIPNFISWVL
VFAVAFSIFS TDGFLSSILI KYGVIDNGVN YLMSNNHMWL KMLAWGMWKG LGWSAIIYIA
AISGIDQQLF EAATVDGAGR FQRMWHITVP SLLPTFLVLL VMAIAGILSN GMDQYLVFQN
AYNTDTVTVL DLYVYKLGIN NGKIPLATVV GMAKSIVSII LLFGANKVSK IIRGNSII