Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_1136 |
Symbol | |
ID | 5741971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 1430300 |
End bp | 1432699 |
Gene Length | 2400 bp |
Protein Length | 799 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 641292241 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001558253 |
Protein GI | 160879285 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.415908 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAGACA AAATAAAAAT AAAGATAATT TTAATCATGG GAGTAGTATT ATCAATTACC ATAATTGCTA ATTATACAAT TAGTGACCAT ATATTGAAGG CTGAATTAGA GAAAGCATTT TCAAAGGAAG TGTTATCTAC TACGCGAGGA TTACGCGCTC AGGTTGTACG AATGCTATAT GCGGGTATAA AAATAGATGA GATTGATGGA TTCGATGAGC AAAGTATAGC TGCTTTTAAA GAAACAGAAA ATTTTAAATT TGCTATTACC TTTGATTTGG ATGGGAACAT TTTATTTCAT AGCGGTAATC AGTATAATGA GATTTCTGAG GATATCATTG GCTATTTAAG AAGTTTGGAT CATATGGATG AAGATATTAA AACGATCGAA TCTAATAATG AGGAATATTA CATATGTAGT CTGCCTGTCA CAGTAAGAGG TGAAACTAAT TCTTATATTG TTGCAGGATA TTGCAGCAGA AGTTATGAAA GAGCAGTAAA ATTTCTTTCT TTTTCAACAG TTGTTATAGC TATACTAATA TTATTGGTAG CTATGGTTAT TAGTATTTAT TTATTAAATC GTTGGATTAC GAAACCTTTA ATTAAGCTTC ATAAAGCGAC GAAAGATATC TTAGTTAATG GCATGGAAGG GGTATCAAAG GTTGAGATAG ATCAAAAAGA TGAAATAGGA AAGTTGGCGG ATTCCTATAA TCAGATGATT GATTTTATAG GACAGAGTAC AGTATCCAAG AGCTATTTAA GAAATGTTAT ATCTAATATT TCCGATGCGT TGGTCGTAGC AGACGCAGAT TTTTGTATCG AAACTGTAAA TGAAGCAACA AAAAAGATGT TTGGATATTC AAAAGAGGAA TTGGTTGGGT CTTCGGTATC CATATTTTTT CCTCAAATTC AAGAACAAGT AATAGAACAT TGGAAAAATA CAATCATTAC GCATCGACAA TATAGTGATT ACGAGGTGAT TATTCACACA AAAGAGAAAA ATGCAATTCC GGTATTAATT AGTAGTACGG TAATGACAGA AGATAACTCA GGGCAAGTTC ATTTTGTATG TATAGCAAAG GATATCTCGG AGCGTAAAAA ATCCGAGGAG TCGATACGTT ATCAGGCAAA TCATGACATG TTAACTGGGC TTAGCAATCG ATATGCACTT GAAAAGGAAA TCCAAGCGTG TTCGAATATG ATATTATTAT ATCCAGAAGA GATGTCGATG TTTTTGTTTC TAGATTTAGA TAAATTTAAA ATAGTCAATG ATGTATGTGG TCACCATGCT GGAGATGAGT TGATTAAGCA TCTCACTTTA ATGATGAAAC AAAATCTTAG AGAACAAGAT ACCCTTGCAC GTATTGGTGG AGATGAATTT GGCGTGTTAT TAAACGGAAT AAGTCAAGTG GAAGGCCTAG AAATTGCAGA AAATCTCTGT GAGACAGTGA AAAAATTCCG TTTTGTATGG GAAGAAAAAG TATTTACCCT AGGTGTCAGT ATTGGTGCTG TGATTATAAA TAGAGATTTA TATGAGGTAT CAAAAGTGAT ATCCGCAGCA GATCAAGCAT GTTATATCTC AAAAGAAAAC GGTGGAAATC GAGTACAACT ATTTAGCGAA TCAGAACAGG AATTTTCTCT TAGAGAGGAA GAAATGCAAG TAATGCCAAG CATAACAAAG GCATTTGAGG AAAATCGTTT TCTTTTGGTT TATCAAGACA TCGTTCGAGT ATCAGATAAG GTTTTAAGTG GGTATGAAGC ATTGATACGT TTGAAAGATG AACAGGGGCA GCTAGTATCT CCTGGAACAT TTCTACCAGC AGCACAGCGT TATAATAAAT TGACTGATAT TGATCGTTGG GTAATAACAA ACTTTTGTAA AAACTATGAT TTCCATCAGA TTGGTTCCAT AGAGAATGAT TTCATATATA ACATTAATAT TTCAGCAACA TCAATTAATG CAGAAGGCTT TCTTGAATTT ATTTGTCATC AGTTTGAAGA ACATCAGGTA CCACCACAGC GTGTATGTTT CGAGATTACT GAAACATCTG CGGTTTCAAA TTTTGTGAAA GCGAAAGAGT TTATTCAAGA ACTTAAGAAG TTAGGTTGCA GATTTGCTCT TGATGACTTT GGTAGTGGTT TGTCTTCCTT TACTTATTTA AAATATCTAC CAGTCGATTA TATAAAGATA GATGGAATTA TTGTCAACGA CATCGATACG AACAAAATAG ATTATGCCTT GGTTTCTTCT ATTAATGAAA TTGCTCATCT AATGGGAATG AAGACAATAG CAGAATATGT AGAGAATGAG GATATTTTTA ATTGTTTACG TGAGATAGGC GTTGATTATG CGCAGGGATT TTGGTTAGGT GAACCAAAGG GGTTATCTAA TATGGTATAA
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Protein sequence | MLDKIKIKII LIMGVVLSIT IIANYTISDH ILKAELEKAF SKEVLSTTRG LRAQVVRMLY AGIKIDEIDG FDEQSIAAFK ETENFKFAIT FDLDGNILFH SGNQYNEISE DIIGYLRSLD HMDEDIKTIE SNNEEYYICS LPVTVRGETN SYIVAGYCSR SYERAVKFLS FSTVVIAILI LLVAMVISIY LLNRWITKPL IKLHKATKDI LVNGMEGVSK VEIDQKDEIG KLADSYNQMI DFIGQSTVSK SYLRNVISNI SDALVVADAD FCIETVNEAT KKMFGYSKEE LVGSSVSIFF PQIQEQVIEH WKNTIITHRQ YSDYEVIIHT KEKNAIPVLI SSTVMTEDNS GQVHFVCIAK DISERKKSEE SIRYQANHDM LTGLSNRYAL EKEIQACSNM ILLYPEEMSM FLFLDLDKFK IVNDVCGHHA GDELIKHLTL MMKQNLREQD TLARIGGDEF GVLLNGISQV EGLEIAENLC ETVKKFRFVW EEKVFTLGVS IGAVIINRDL YEVSKVISAA DQACYISKEN GGNRVQLFSE SEQEFSLREE EMQVMPSITK AFEENRFLLV YQDIVRVSDK VLSGYEALIR LKDEQGQLVS PGTFLPAAQR YNKLTDIDRW VITNFCKNYD FHQIGSIEND FIYNINISAT SINAEGFLEF ICHQFEEHQV PPQRVCFEIT ETSAVSNFVK AKEFIQELKK LGCRFALDDF GSGLSSFTYL KYLPVDYIKI DGIIVNDIDT NKIDYALVSS INEIAHLMGM KTIAEYVENE DIFNCLREIG VDYAQGFWLG EPKGLSNMV
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