Gene Cphy_1002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_1002 
Symbol 
ID5743942 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp1266349 
End bp1266879 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content33% 
IMG OID641292109 
Product2'-5' RNA ligase 
Protein accessionYP_001558121 
Protein GI160879153 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000523375 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGATTT TTATTGCAAT AAATTTTACG GAAGAGATAA AGCATAACTT ATATGAGCAA 
ATTTTGAATT TAAAAGGGAA GTCAATAAAG GGAAATTTTA CACGCAAAGA AAATCTTCAC
CTAACTCTGG CTTTTCTAGG GGAGGTTGAT GAAAAGCATT TAGAAACATT GAAAAATGTA
ATTAATCAAT TAGAGGTCTC TGAATTTCCT ATTAATCTTT CTAATATGAG TGCATTCCAT
AATGGAGATG AGCTGTTGCC TTGGATAGGC ATAGTTCCTA ATACAAAACT GCAAGTATTG
CAGCAGCAAT TAACTGAAGG ATTAAAGGCA TCTGGATTTG CCCACGATGA AAAGAAATTC
ACTCCTCATG TCACCTTAGG GCGTAAAGTT CTTATGAAAA GTAATACCGA GCTTAATAGG
TATGACGGAT TATGTGGAAA AGAAATAGTG GTTAATGCAA TTAGTATAAT GAAATCTGAA
AGGATAAATG GAATCCTAAC TTATACCGAA ATTTATAAAA GAAAGATTTA G
 
Protein sequence
MRIFIAINFT EEIKHNLYEQ ILNLKGKSIK GNFTRKENLH LTLAFLGEVD EKHLETLKNV 
INQLEVSEFP INLSNMSAFH NGDELLPWIG IVPNTKLQVL QQQLTEGLKA SGFAHDEKKF
TPHVTLGRKV LMKSNTELNR YDGLCGKEIV VNAISIMKSE RINGILTYTE IYKRKI