| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0932 |
|---|
| Symbol | |
|---|
| ID | 5741804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 1188484 |
|---|
| End bp | 1190736 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641292043 |
|---|
| Product | polysaccharide lyase family protein 8 |
|---|
| Protein accession | YP_001558055 |
|---|
| Protein GI | 160879087 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0363871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAC AGGAAGCAAT GAGCAAAATG TGCGAGAAAG CAGCGATGCA GCCTTTTCGA
ACACATGAAT ATCGGAATAT AGGGAAAGAA GAAGATAAGC AGAAATTTAT TCATACATTG
ACAGCTCAGG GTAGATTCTC TGATTTGGGA GACTCTCCTG ATGATGCAGT ACAAGCACTT
CAAAGACTGG CATTTTTGTC AGAAGACTAT CACTGGAAAT TAGGGATAGA CTGGCCAGAG
GGACTAAAAA GTATTGTACT TTCTGCGGCA AAATATTATT GCAAAATAGA AGCGGACAGA
GAAGATATGG GAGCAAGCAG ATTTCATCAA TCCATTTTCC GTTTTCCTGT GGCCTCGCTG
AATCTATTTT TTATGCTGTA TCCAGATATG GAAAGAGGGG AAGCTAAACC AAAACAGTAT
CCCCTGGAAG CGGGGGCGCG TAGGGAAATC CTTAGGGTTG CATATCAAAC ATTTTCATTA
CCTGTGAGGA ATGATGAGAC AGATAAGAAT CCGGTAAGCG TGGAACGTTT TCAGAAGCAT
GTATGGTGGA TTGGAGGAAA TGCGCTTACC TATAGACCGG TATTGTATAC AGCATTGGCA
TTTAAAAGTA TCGATATGAT GCAGGTAATT GCACAGGTAG CGGCTTGTTC CATATGTGCC
GTTTCTCAGG CCGTAATTGA GGATGCATTC TGGCAGGAAG GAATATGTGC AGACGGTTTT
GGCTGGGGGC ATGGTAAACA AGCATATAAT AGTGGATATC CAACGGACGG ACTGAATGAG
GCACTTAATA TTTTATCCTA TATTGTTGGA ACTCCATTTG AAGATGTATT AGAATATGCA
GATTTCTCCA AGCTGATTTC TTATATACGT GGGATTACAT GGAGTGCTTA TGGTAGTTTC
TCTGCTCCAA TGCAAACAAG AAATATATTT TTAAGAGATA AGAGTAAGAA GAAGACAATG
GATGAATTAG CGGTACATAT GGCAGAGTAT CTAGCAAACT ATTTTAGTGC TTACTTGACA
GAGGAGGAAC GAAGGGAAGT GGATATGCTT CTGGAAAGAA AGTTGTCCTT GGAGATGACA
TGTAGGGATG GACTGTATAA AGGAGTCCGC TATTTTTGGA ATAATGATGA CTTAATAAAG
AAAAATAAAG GTTTTTATTT TTACGTAAAT ATGGCATCTA GCCGTTGTGA TGGTGTGGAA
TTTGCAGATA TAATGGCAGA TAAAAGAAAT TATTATACAG CAGATGGCTC TTATACTGTC
CTTGTATCAG GAAAAGAGTA TGAAGATGTG ATGGGAACTT GGCAGGTAGC CCATCTTCCG
GGAGTCACAG AACGTTTTAT ACCAAATAGT GAACTGTTGA CAGAGACTAA CTGGCATGGT
TATCGCAGTA AATTTAACTT TGCTGCAGGA GTTTCTATAG GAGAAAATGG ATTGTGTGGT
TTTATATATG AGAAAGATGA AATCAGAGAA CCAGACGGTG CAGGAGTAAT CCGTAAAGAA
TTTACGGTAG AAATGTGTGG AATACAGGCG TATAAATCCT ATTTTATTAT AGAAGATACA
ATTTATTGTC TTGGAGCTGG TATATGTGAT ATCCATCCTG AACATGGAAG AGAAGTACAT
ACAACTGTAA ACAATACACT CCTTTGCAAT GATACAGAAC CTGTGGAAAA GGATGGATAT
GTATTTATTG AAAATGACAA AATTCTATAT GGAATACGAA AACAGGAAAA TAGTAAGATT
TGCATAACAA AAGAAAAAAG AAAAACAGCA TGGGAAGATC TAAATTACAT GAATGAGGGT
GAGAAAGAGG AAGAATATCC TGTATTTGAA ATTATAGTGG ACCACGGGGA AAACCCTCAG
AATGCTTCCT ATGAATATTT CATGTGTATC AATCATAAAA AATATGAAAA TGTAATGGTA
TTGGAAAATT CAAAAAGACT GCAAGCAGTG TCAAAGAATG ATTTTTCAGT AGTGGAAGGG
GTATTTTTTG ATAGTGAAAA AACACTGAAA ATGAAGGACA TAGAAATAAC GGTGTCCCAA
CCATGTGCTC TTTTATTACA GCAAGAGGAA GATGGGTACA GGATAGCTGT GTGTGACGCA
GAGCAGAAAC CGGAATTGAA GGAAGTTATC GTAACGGTTA TCCGTGAGGG ACATGATAAA
CAAGAAGTGG TAATTAAGAT GCCGGATGGT TTATTCAGGG GAAAACAAGG GGAAGGCTTC
TATTCATATA GCAAAAAAAG AAATGAGTTA TAG
|
|---|
| Protein sequence | MTKQEAMSKM CEKAAMQPFR THEYRNIGKE EDKQKFIHTL TAQGRFSDLG DSPDDAVQAL
QRLAFLSEDY HWKLGIDWPE GLKSIVLSAA KYYCKIEADR EDMGASRFHQ SIFRFPVASL
NLFFMLYPDM ERGEAKPKQY PLEAGARREI LRVAYQTFSL PVRNDETDKN PVSVERFQKH
VWWIGGNALT YRPVLYTALA FKSIDMMQVI AQVAACSICA VSQAVIEDAF WQEGICADGF
GWGHGKQAYN SGYPTDGLNE ALNILSYIVG TPFEDVLEYA DFSKLISYIR GITWSAYGSF
SAPMQTRNIF LRDKSKKKTM DELAVHMAEY LANYFSAYLT EEERREVDML LERKLSLEMT
CRDGLYKGVR YFWNNDDLIK KNKGFYFYVN MASSRCDGVE FADIMADKRN YYTADGSYTV
LVSGKEYEDV MGTWQVAHLP GVTERFIPNS ELLTETNWHG YRSKFNFAAG VSIGENGLCG
FIYEKDEIRE PDGAGVIRKE FTVEMCGIQA YKSYFIIEDT IYCLGAGICD IHPEHGREVH
TTVNNTLLCN DTEPVEKDGY VFIENDKILY GIRKQENSKI CITKEKRKTA WEDLNYMNEG
EKEEEYPVFE IIVDHGENPQ NASYEYFMCI NHKKYENVMV LENSKRLQAV SKNDFSVVEG
VFFDSEKTLK MKDIEITVSQ PCALLLQQEE DGYRIAVCDA EQKPELKEVI VTVIREGHDK
QEVVIKMPDG LFRGKQGEGF YSYSKKRNEL
|
|---|
| |