| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0630 |
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| Symbol | dapF |
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| ID | 5741679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 817872 |
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| End bp | 818786 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 641291742 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001557756 |
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| Protein GI | 160878788 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.822901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTATTA GAGTAAAAAA GGTTTTCACA AACAAAATTG TACTTGTGGC ACAAAGTTTG
CAGAAAGGCA TGGTAGCTAA TATGAAATTT ACAAAGATGC AAGGTTGTGG AAATGATTAT
GTTTACGTAA ATTGTTTTGA GGAAACCATA AATGATCCAA ATGGAGTGGC AAAAAAGGTG
AGTGATCGAC GTTTTGGAAT TGGTTCTGAT GGATTAATCT TAATCAAACC TTCTGAAATT
GCAGATTTTA CGATGCATAT GTATAATGCA GACGGATCAC AAGGAAAAAT GTGCGGAAAT
GGTATTCGCT GTGTTGGTAA GTACGTTTAT GACCATGGTA TGACACAAAA AACAAGCCTA
GCGATCGAAA CATTAGGCGG TGTGAAATAC TTAGCTTTAA TTGTTGACGG CGGAAAAGTA
ACAGAAGTAA CAGTTGATAT GGGTGAACCA GAATTAGACC CTAAATTAAT TCCGATTGCA
GTAGAGGAAG AACAGGTAGT AAATATGCCA ATAACAATTG CTGATCGCGA ATTCTACATC
ACAGGTGTTT CGGTAGGAAA CCCTCACGCG GTTACCTTTA TTGAGGATAC CAACTCTTTC
CCAATAGAAA ACTATGGTCC ATTGTTTGAA GAGCATCCAT TATTTCCAGA AAAGATCAAT
ACGGAGTTTG TACAAATCCT CGACCGTAAG ACTGTCAATA TGCGTGTTTG GGAACGTGGA
TCTGCGGAAA CTCATGCTTG TGGAACCGGT GCTACGTGCT CTGTGTATGC AGCTATCTTA
AATGGCTTAA CGGAGGATGA AGTGACAGTT CATATGTTAG GCGGTGACGT TGTCATTCGC
TATGACAGAG AGAAGAATCG ACTATTTATG ACAGGTCCAG CTGTAACTGT TTTTGATGGT
GAGATAGAGT TATAA
|
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| Protein sequence | MIIRVKKVFT NKIVLVAQSL QKGMVANMKF TKMQGCGNDY VYVNCFEETI NDPNGVAKKV
SDRRFGIGSD GLILIKPSEI ADFTMHMYNA DGSQGKMCGN GIRCVGKYVY DHGMTQKTSL
AIETLGGVKY LALIVDGGKV TEVTVDMGEP ELDPKLIPIA VEEEQVVNMP ITIADREFYI
TGVSVGNPHA VTFIEDTNSF PIENYGPLFE EHPLFPEKIN TEFVQILDRK TVNMRVWERG
SAETHACGTG ATCSVYAAIL NGLTEDEVTV HMLGGDVVIR YDREKNRLFM TGPAVTVFDG
EIEL
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