| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0548 |
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| Symbol | |
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| ID | 5743462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 705501 |
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| End bp | 707942 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641291660 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001557674 |
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| Protein GI | 160878706 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.237562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGAAAT CGTTAAATCA GAGTACAGAC ACAAACTTAG AACCGAAAAA ACTTCATAAT
GTAAGTTCCA TTCTTCAGAA TGAAAGTACA ATTCTAGAGA ATGGAAGTTC CATCCAAAAG
AATGGAAATG CCATTCAAAA GAATGACATT GACTTAATGC AGGATGAAAC TGCAATTAAA
TATCAAAAAG ACCGCAAAAT AGGTGTTGTT CCATCGGATT TTACAAGTCC TGACGAGCTC
TATGAGATTT TGCTTAAGAC CATTCGTGCC TATCACCCAT CCACTGATGT AGAGATTGTT
GAGAAGGCTT ATAAAATTGC GACTTTTGCA CATAAAGATC AGTTGCGAAA ATCAGGTGAA
CCTTATATTA TACATCCGCT TTGTGTAGCG ATTATTCTTG CAGAATTAGA ACTTGACAAG
GAAACAATTG TTGCAGGAAT TCTTCATGAT GTTGTGGAGG ATACGGTATT AACCGTATCA
GAGCTTACAA AAGAGTTTGG AGAGGAAGTA GCGCTGTTAG TGGATGGTGT TACGAAGTTA
ACTCAATTAA ATTATTCAAA GGATAAGGTG GAAATCCAGG CTGAAAATCT TCGTAAGATG
TTTCTTGCTA TGGCAAAGGA TATCCGTGTT ATTCTAATTA AGTTGGCAGA CAGACTTCAC
AATATGAGAA CGATGCAGTA CCAGACGCCT AAAAAACAGA TAGAAAAATC CAGAGAAACG
ATGGATATCT ATGCTCCAAT AGCGCAACGT CTTGGTATTT CTATGATAAA AATAGAGCTG
GATGATTTAT CGCTACAGTA CCTAGAACCT GAAGTTTATA AGGAACTGAA TGAAAAAATC
GCATCAAAAA AAGAAGAGCG AGAAGCTTTC ATTAATAGCA TCGTAGAGGA CGTTGGAAAA
CATATCGCAG AAGCAAATAT TTCAGCAAAG ATAGATGGTC GAGTAAAACA CTTCTTTAGT
ATCTATAAAA AGATGGTGAA TCAAGGGAAA ACCTTAGAGC AAATCTATGA CTTATTTGCG
GTAAGGATTG TTGTGGACAC TGTAAAGGAT TGCTATGCAG CTCTCGGAGT CATTCATGAG
ATGTATAAGC CGATACCAGG GCGTTTTAAA GATTATATCG CAATGCCCAA ACCAAATATG
TATCAGTCTC TTCATACCAC TTTAATTGGT CCGAATGGAC AGCCTTTTGA AATACAGATT
CGTACTTTTG AAATGCATCG TACTGCAGAA TATGGTATTG CAGCGCATTG GAAATACAAA
GAAGGTCATG ATGGTAAAAA TACAAGAGAT ACCGAAGAAG CAAAGCTTAC TTGGCTTCGT
CAGATACTTG AGTGGCAAAG AGATTTATCG GATAACAAAG AATTTTTAAG TTTGTTAAAG
AATGATTTAG ATTTATTTTC AGACAGTGTT TATTGCTTTA CACCAACAGG AGATGTAAAA
AATCTACCAG CTGGCTCTAA TCCAGTAGAT TTTGCCTATA GTATTCATAG TGCAGTTGGA
AACAAGATGG TTGGTGCTAG GGTGAATGGT AGACTTGTAC CAATTGACTA TGTGATACAA
AATGGTGATC GTATTGAAAT CATGACGTCG CAAAATTCGA AAGGTCCAAG TAGAGATTGG
CTCAATATAG TTAAGAGTAC TCAAGCAAAA AATAAAATCA ATCAATGGTT TAAAACAGAG
TTAAAAGAAG ACAATATCAT CCGCGGTAAG GAGATGCTTG TTGCATACTG TAAAACCAAA
ACAATTACAA TGAGTGACTT ATTAAAGAAT GAGTTTATGG AAGTTGTAAT GAAAAAGTAC
GGTTTTCGTG ACTGGGAATC CGTTTATGCA GCAGTAGGGC ATGGTGGATT AAAAGAGGGG
CAGGTTATTA ATAAGCTGCA AGAGGTATAT ACGAAGAAGA ATCGGAAAGA AATGACTGAT
GAAAAGGTTC TTGAAACGAT TGCAGATGTG AAGTTTGACC GACCAGCAGT TATGAAATCC
AAAGGTGGTA TCGTAGTACA AGGAATTCAT GATGTCGCTG TCCACTTTTC AAAGTGTTGC
TCTCCAGTAC CAGGTGATGA AATCGTTGGA TTTGTTACAA GAGGACGTGG AGTTTCTATA
CATCGTACGG ATTGTATTAA TGTGATTAAC CTTCCATATG AAGATAGGGA ACGATTAATT
GATGCTGAAT GGAATATACC TGCGGATAAG CAAAATTCCG GGCTATATAC TGCTGAGATT
AAAATCTATG CAAACAACCG GAATGGAGTT TTACTTGATG TATCAAGAAT TTTTACGGAA
AATAAGATTG ATGTTATCTC TATGACGGTA AGAACGAGTA AACAAGGGAC CGCAACTATT
AGTGTGGGGT TTGAAATAAA TGGAGTGGAG CAGTTGCATT TCATTATTGG TAAACTTCGC
AGTATTGAGA GTGTAATTGA CATTGAACGT ACTACAGGTT AA
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| Protein sequence | MEKSLNQSTD TNLEPKKLHN VSSILQNEST ILENGSSIQK NGNAIQKNDI DLMQDETAIK
YQKDRKIGVV PSDFTSPDEL YEILLKTIRA YHPSTDVEIV EKAYKIATFA HKDQLRKSGE
PYIIHPLCVA IILAELELDK ETIVAGILHD VVEDTVLTVS ELTKEFGEEV ALLVDGVTKL
TQLNYSKDKV EIQAENLRKM FLAMAKDIRV ILIKLADRLH NMRTMQYQTP KKQIEKSRET
MDIYAPIAQR LGISMIKIEL DDLSLQYLEP EVYKELNEKI ASKKEEREAF INSIVEDVGK
HIAEANISAK IDGRVKHFFS IYKKMVNQGK TLEQIYDLFA VRIVVDTVKD CYAALGVIHE
MYKPIPGRFK DYIAMPKPNM YQSLHTTLIG PNGQPFEIQI RTFEMHRTAE YGIAAHWKYK
EGHDGKNTRD TEEAKLTWLR QILEWQRDLS DNKEFLSLLK NDLDLFSDSV YCFTPTGDVK
NLPAGSNPVD FAYSIHSAVG NKMVGARVNG RLVPIDYVIQ NGDRIEIMTS QNSKGPSRDW
LNIVKSTQAK NKINQWFKTE LKEDNIIRGK EMLVAYCKTK TITMSDLLKN EFMEVVMKKY
GFRDWESVYA AVGHGGLKEG QVINKLQEVY TKKNRKEMTD EKVLETIADV KFDRPAVMKS
KGGIVVQGIH DVAVHFSKCC SPVPGDEIVG FVTRGRGVSI HRTDCINVIN LPYEDRERLI
DAEWNIPADK QNSGLYTAEI KIYANNRNGV LLDVSRIFTE NKIDVISMTV RTSKQGTATI
SVGFEINGVE QLHFIIGKLR SIESVIDIER TTG
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