Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_0171 |
Symbol | |
ID | 5745039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | - |
Start bp | 214786 |
End bp | 216945 |
Gene Length | 2160 bp |
Protein Length | 719 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 641291261 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001557297 |
Protein GI | 160878329 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCGTC AGCAATTAAA TATCCACCAA ATATTAGATA TATTTTATAA ATCCACTGGG ATTGAAGCCA TTTTCTTCGA TACCGAGCTT AATCTCATTA TGCACCGCGC TTCTGAAAAA TTAACCACAT ATTATCCTTT TCTTGGTATT AGTGAGGTTA TGGCTTATTT AGCAGATCGT TTTTCGGAGC AACCAGGTAC TAACTCTGCA TTTTATACCT ATGTGTTACC AAACAATTTC CTCTGCAATA TTGCTTTTCT TACTCAAGAA AATAGCTATA TAGGGGCTTT TCTAACAGAG CCAGTATTAT TAAAAAAACT AAACAAAAGT GACCTTGATA AGGTTTTGAA TCGATCCGAA CTTTCCAATC AAGATAAAAA AACATTTGAA AATATCCTGT TTAAAGTGCC TGTAATACCA TACATAAATA TATTACCAAT TGGCACTGTT CTTTATCAAC TTTCCAAGAC ATATTCCGAA AACATGCCAC AACAAATCAT AATTGAGCAT AAAGCAAGAA CGTCTGCATT AAACCATAAC TCAAATAAAA AACAAAACAT TGTCATAACA TCTTCTGTAA AATACACTCC ATTTTCTACC TATCTACAGA TTATAGAAAT TATTAAAAGT GGTGATGTGG TAAGGTTACG AAGTGCTATG AATGAAATTA GTGTTGGCGA AATACTGATG AATCAGTCAA ACGACTCAGA TATTATGCGT TCTATAAAGA ATAGCTTTAT CAAAACTTGT TCGATGGGCT GTTACGCTGC TATAGACGCA AATGCCTCAT ATGAAAAGGT TATGGATATT TCAGATGACT ATATTTCTAA GATTGAGACT AATGATAATA TCAATGATAT AATAGCTCTC TTAAAAGAAG TAATGATTTC ATATACCAAA GCGGTGGCGA TGAATCGAAA TACCATTTAC TCTAAACCTA TCCGGCAGGT AATGGAGTAT ATTCAGTGCC ATTATGACGA GAAAATTACC TTGGAAAAAC TATCAGAGTA TACCGAACTT AGTACTTTTT ACTTATCCAA TTTAATTAAG AAAGAAACCG ACCTTAGTCT CCCTGATATT GTAAATAAAG TTCGAATTGA AAAGAGTAAA CCCTTACTTT TAAACATGAA TATCAGTATT CTTGATGTGG CTCAAAGGGT AGGTTTCAAC TATCAAAATC ATTTTGCATC TATATTTAAA AAATATACCG ATCTTACACC CACGGAATAC AGAAAAACCA TGAGTTATAA ACAAAACACA AATTCAAGCG AGTTTGAAAA TAGCCTAATA AATGTAGTTG AGCAGATAAA TAATAAAATA TCAATGTTCT CACATTTGTT TGATGCAGCG CGAATTGTCG ACCCGATACG TCATAAATCC ATGTTTATTA AAACAAGTGA TACGGTATTC CCTGAAGAAA CCTGCTATCA CTTTTGGTAT AGAAGCGAAT CTTGTCAAAA CTGCATTTCC ATGAAGTCCT ATTTGCATAA TGATACATTT TTTAAAATTG AACATCGAGA TAACGATACC TTTTTAATGA TAGCAACGCC AAAGACAGTT GGGAAAGACA CCTATATTGT AGAAATCATG AAAGATGTAA CAAAACAATT GTCAATCAAC ATAAAAGCAG AAAGTCCAGA AAATCCTACT CTTGTAATTG ATAAAAAGTT TCGGGAGGAA AAGGATGAAC TCACTGGGCT CTATAATAGA AGATACATAA GTGATCAATT ACCAGTTTCC ATGAGACATA GCATTCTTGA GAGAAAATCG TTGTTCATTG TATTGTTCGT TATTGATGAG CTGCAATCTA TAGATAACTA TAGTGATTAT GAATCTTACG ATTCTATATT AAAAGAATTC ACCCGTCTTA TTACGTCTTC TTTAGTAAAC AAAAAAGATT GGGCTGGTCG TTATGCTGGT AGTTTATTTT TATTAGTTTT ATATGATACC GATTACGAGA GCGCATGTAA TACAGCAGAT AATATAAAGA ATAATTTTAA TCAGACTTCT TTTCAAATCA ATGGAACTGC TGTTAAGTTG ACAGCAAATT ATGGTGTTAA GTTACTCAAT GAGGATATCT CAGATGTAGA GACATTAATA TTACATGCAT TTATGAATCT GATTACCAAT AAACTTCGAG TACAGAATAT CATTGATTAA
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Protein sequence | MKRQQLNIHQ ILDIFYKSTG IEAIFFDTEL NLIMHRASEK LTTYYPFLGI SEVMAYLADR FSEQPGTNSA FYTYVLPNNF LCNIAFLTQE NSYIGAFLTE PVLLKKLNKS DLDKVLNRSE LSNQDKKTFE NILFKVPVIP YINILPIGTV LYQLSKTYSE NMPQQIIIEH KARTSALNHN SNKKQNIVIT SSVKYTPFST YLQIIEIIKS GDVVRLRSAM NEISVGEILM NQSNDSDIMR SIKNSFIKTC SMGCYAAIDA NASYEKVMDI SDDYISKIET NDNINDIIAL LKEVMISYTK AVAMNRNTIY SKPIRQVMEY IQCHYDEKIT LEKLSEYTEL STFYLSNLIK KETDLSLPDI VNKVRIEKSK PLLLNMNISI LDVAQRVGFN YQNHFASIFK KYTDLTPTEY RKTMSYKQNT NSSEFENSLI NVVEQINNKI SMFSHLFDAA RIVDPIRHKS MFIKTSDTVF PEETCYHFWY RSESCQNCIS MKSYLHNDTF FKIEHRDNDT FLMIATPKTV GKDTYIVEIM KDVTKQLSIN IKAESPENPT LVIDKKFREE KDELTGLYNR RYISDQLPVS MRHSILERKS LFIVLFVIDE LQSIDNYSDY ESYDSILKEF TRLITSSLVN KKDWAGRYAG SLFLLVLYDT DYESACNTAD NIKNNFNQTS FQINGTAVKL TANYGVKLLN EDISDVETLI LHAFMNLITN KLRVQNIID
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