| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0117 |
|---|
| Symbol | |
|---|
| ID | 5744267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 156810 |
|---|
| End bp | 157454 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641291205 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_001557245 |
|---|
| Protein GI | 160878277 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0490] Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGAAC AGAGGAAGAA TAAGAATGCA ATCCCTAGGT ATCAGCAGAT TGCAGTGGAG
ATAGCATCAA GGATCGCAAG TGAAGAATAT AAAGTCGGAG ATAAGATATA TGCTCGTTCT
TCTATTGCAG GGCAGTATGG AGTTTCTCCG GAAACTGCCA GAAGAGCTAT TTGTGTTTTG
TGTGACTTAG AGATTGTAAC ATCTGAAAAA GGTAGCGGTG TTACAATTAA GTCAACTGAA
AATGCGATAA AGTTTATTAA GCAGTACAAC AAACGCCAAA CGATTGATAC AATCAAAGAT
AATATCCAAC AAAGTATTAT AAGGCAGAGA ACGGAAATGG AAGTTATGAA CCAACATTTG
ACGGAACTTA TTTCTGCTTC TGAGCATTTT CGTTCGTTAA ATCCTTTTAT GCCATTTGAA
ATACTGATTA CGAAAGAGTG TGTCTTTCTT GGTAAAACGG TAGCAGAATT ACAATTTTGG
CAGCATACTG GCGCTACTGT GATAGCAATT CGTCGAGGGG ATGAAACCAT GGTTTCGCCT
GGTCCATATA CTCATATTAA AGAGCATGAT ATCCTATATT TTATTACACA GGATGATGCT
CCGTATCGAG TTAAAATTTT TTTATATCCA AATACAACGG AATAG
|
|---|
| Protein sequence | MEEQRKNKNA IPRYQQIAVE IASRIASEEY KVGDKIYARS SIAGQYGVSP ETARRAICVL
CDLEIVTSEK GSGVTIKSTE NAIKFIKQYN KRQTIDTIKD NIQQSIIRQR TEMEVMNQHL
TELISASEHF RSLNPFMPFE ILITKECVFL GKTVAELQFW QHTGATVIAI RRGDETMVSP
GPYTHIKEHD ILYFITQDDA PYRVKIFLYP NTTE
|
|---|
| |