Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_0032 |
Symbol | |
ID | 5744952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 47419 |
End bp | 48633 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641291114 |
Product | type II secretion system protein E |
Protein accession | YP_001557161 |
Protein GI | 160878193 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 57 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACAGA GGAAGCAAGA ATTACAAGAA CAAATTCTTG CGGGAATAGA TATGACAAGA GAATTAACAG AAGAAGAATT ATTTGACCAT ATTGATGAAG CGATTAAGGT TCGTGGCAAA GAAGAATACA TAAGTATTAC CGAAAAACAA CGACTTCGTA TAGAAATCTT TAATTCCATT CGTAGGCTTG ATGTATTGCA GGAACTTGTT GAAGATACTT CCATTACAGA AATTATGATA AATGGTGCGA AAGAAATATT CGTGGAGCGA GATGGAAAAC TGATGAAATG GGAGAAGGAG TTTGAATCAG ATCGTAAGCT TGAGGATGTG ATTCAAACGA TTGTCGCAGG GGCGAACCGT ATTATTAATG AAGCGAGCCC AATTGTGGAT GCAAGATTAA AGGATGGCTC CCGTGTCAAT ATAGTACTTC CACCCATAGC AATCGGAGGA CCAACCGTTA CGATTCGTAA GTTCCCCAAG GAAACAATGA CAATGGAAAA GCTGGTGACA ATTGGTTCCT TGACCGAAGA AGCTGCTGAG TTTTTAAAGA AATTGGTGAT TGCAGGCTAT AATATCTTTG TTAGTGGAGG TACCGGTTCA GGAAAAACAA CCTTCTTAAA TGCATTGTCA AACTACGTTC CCTCGGAAGA ACGAATCATT ACCATCGAAG ACTCTGCAGA GCTGCAAATA CGTAATATTC CAAATTTAGT TCGCTTGGAG GTAAGGAATG CAAACGTGGA GGGGAAGAAT GAAATCTCGA TTCGTGACTT AATCAAAAGC AGTCTTCGTA TGAGGCCCGA CCGTATTATT GTCGGAGAAG TTCGAGATGC CTCCAGTATT GATATGTTAC AAGCTCTCAA TACAGGACAT AACGGAATGA GTACAGGACA TTCCAATTCT CCAACGGATA TGTTATCTCG ATTAGAAACC ATGGTTTTAC TTGGGGCGGA TATACCACTA TTGGCTGTTA GAAAGCAAAT TGCATCCGCA ATTGATATTG TAATTCACCT TGGAAGACTT CGAGACAAGA CGAGAAAAGT TTTAGAAGTC GTAGAGGTTT TAGAATGTGT GGATGGGGAA ATCGAAGTGA ATCCGCTTTT CTTATTTTCA GAAGAAGGGG AAACGAAGGA GGGAAAAGTA TTAGGAGAAC TAAAAAAGAC AGACAATTCA CTACTCCATG TACAAAAGTT ATTACGTGCA GGGCTATCCT TATAA
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Protein sequence | MEQRKQELQE QILAGIDMTR ELTEEELFDH IDEAIKVRGK EEYISITEKQ RLRIEIFNSI RRLDVLQELV EDTSITEIMI NGAKEIFVER DGKLMKWEKE FESDRKLEDV IQTIVAGANR IINEASPIVD ARLKDGSRVN IVLPPIAIGG PTVTIRKFPK ETMTMEKLVT IGSLTEEAAE FLKKLVIAGY NIFVSGGTGS GKTTFLNALS NYVPSEERII TIEDSAELQI RNIPNLVRLE VRNANVEGKN EISIRDLIKS SLRMRPDRII VGEVRDASSI DMLQALNTGH NGMSTGHSNS PTDMLSRLET MVLLGADIPL LAVRKQIASA IDIVIHLGRL RDKTRKVLEV VEVLECVDGE IEVNPLFLFS EEGETKEGKV LGELKKTDNS LLHVQKLLRA GLSL
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