Gene Cphy_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_0004 
Symbol 
ID5744064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp3870 
End bp4952 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content33% 
IMG OID641291076 
ProductDNA replication and repair protein RecF 
Protein accessionYP_001557134 
Protein GI160878166 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGTAA AGTCTCTTGA ATTGAGTAAT TTTAGAAATT ATGAGAACTT ATCTTTGGAG 
TTTTCTCCAT CGACTAATAT TTTGTATGGA GACAATGCTC AGGGAAAGAC AAACATACTT
GAAGCAGTGT TTCTTTGTGC TACCACAAAG TCACATAAAG GAAGTAAGGA CAGAGAAATT
ATTAAACTAC AGTCAGAAGA AGCACATATT CGCATGAGGA TAAATCGGGA TGATGTGGAT
CATCGGCTTG ATATGCACTT AAAAAAAAAT AAACCCAAAG GTGTTGCTAT TGATGGAATT
CCGATTAAAC GATCTTCTGA ATTATTCGGT ATCATTAATG TTGTATTTTT TTCTCCGGAG
GATTTATCCA TAATTAAAAA TGGACCTAGC GAACGTAGAC GGTTTATTGA CATGGAACTT
TGTCAATTAA GTAAGTTATA TCTACACAAT CTGATAAATT ACAACAAAGT TTTAAATCAA
AGAAACAATT TATTAAAGCA AATAGGTTTT AACAAAAGTT TATTGGATAC GCTTTATGTG
TGGGATCAGC AATTAATTCA TTTTGGGTCT GCATTGATTA AAGAGAGAGA TGCCTTTATG
AAAAGCATGA ATGAACTTAT TATTGCACTA CATAAAAAAC TTAGCGATGG AAAAGAAGAA
TTAGAGATCG TTTATGAAGC AAGTGTAGCA GAAAGTGAGT TTGAAAATAA ACTTAAAAAG
AGTATGGAAC GTGATATAGC CTTAAAGGTA ACAAACGTAG GACCTCATCG GGATGACCTT
AGTTTTCTAA TCAATGGTCA GGATGTCAGA AAGTATGGAT CACAAGGGCA GCAAAGAACT
GCTGCATTAT CTTTAAAGCT TGCGGAAATA GAATTAGTAA AACAGGTAAC GAAAGATAAA
CCAATTCTAC TGTTAGATGA TGTATTGTCC GAACTAGATA GAAAAAGGCA AAATCAGTTA
TTAGATAGCA TTGTTGGAAT TCAAACTATA GTAACCTGTA CCGGTCTTGA AGAATTTGTG
AATAACAGAA TAGAGACGGA TCGAATTTAT AAGGTTATTC AAGGAACTGT TGAAAAGGGA
TAA
 
Protein sequence
MIVKSLELSN FRNYENLSLE FSPSTNILYG DNAQGKTNIL EAVFLCATTK SHKGSKDREI 
IKLQSEEAHI RMRINRDDVD HRLDMHLKKN KPKGVAIDGI PIKRSSELFG IINVVFFSPE
DLSIIKNGPS ERRRFIDMEL CQLSKLYLHN LINYNKVLNQ RNNLLKQIGF NKSLLDTLYV
WDQQLIHFGS ALIKERDAFM KSMNELIIAL HKKLSDGKEE LEIVYEASVA ESEFENKLKK
SMERDIALKV TNVGPHRDDL SFLINGQDVR KYGSQGQQRT AALSLKLAEI ELVKQVTKDK
PILLLDDVLS ELDRKRQNQL LDSIVGIQTI VTCTGLEEFV NNRIETDRIY KVIQGTVEKG