| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4504 |
|---|
| Symbol | |
|---|
| ID | 5756339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 5326720 |
|---|
| End bp | 5328831 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641290863 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001556921 |
|---|
| Protein GI | 160877605 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000141313 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.145781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTATTTA AATATTCAGT TTTAGGTTTG GCCGTAGGTT CGGCATTAAT GGCTATGCCA
GTGTTGGCAG AGGTGGCTAG CGACGCAAAT ATCGAGCGCA TTAATGTTAC TGGCCGCACT
TTTAACGATT ATAAAGTGGG TACAGCATCA GGCGCCATGC GCGGTGATAT TGACTTAATG
GATACCCCAC AATCAGTTAA TGTGATCCCC GATTTTGTCA CGGACGAACA GCTGGCGACT
AACCTCGCTG AAGTGTTAGT TAACGATTCG AGCGTGACGG CAGGAACGGC ACGCTGGAAC
CGCCAAGTTT TTAGCATCCG TGGCTTCGAG TTAGATTCTG GTAATGGTTA TCTCATCAAT
GGCCATCAGC AATGGTCCCA TTACGTACAA CCCATCGAAA CCCTGCAGCA AGTTGAAGTG
TTAAAAGGCC CTTCGAGCAT GTTGTATGGT CAATCTGGCC CTGGTGGTTT AGTGAATATG
GTCACTAAGA AACCAACCTA TGATTCAATG CTTAACTTAG GTTTTGATAC CGATGGCTAC
GGTTCTACCC GTGCACAGCT CGATGCGGGT GGCAGTTTAA ACGAAGCACA AAGTATTCGT
TATCGCGGTG TGTTAGTGAA GCAAGATACA AAATACTGGC GTGAGTATTC CGCTAATGAT
GAGAACCAAG AGCGCGATCG CTGGTTAGGT TATCTCAATA TGGAATTTGA CCTAAGCGAC
GATTTGTTAC TGTCGGTTAA ATACGACCAT ACCCAAGATA AAGCAGGTAT CGATGCGGGT
GGGTGGTTAG ATAAACAAGG TAATGTCATT GGCGAACGTA AAACCGTTTG GGATGCGCCT
TGGGCCTTTA CTGACAATAC AGTGTCAAAC TTAGGTGCCG ATCTGACTTG GCATATGAGT
GACAACTGGA AAGTCAAAGC GGGTTATAAC GAGCAGCAGT TTAATCGCCA ACGTTTTGAT
TCTGCGCCGC AATATACAGA AGACCCATTC ACCAAAGGCT ATAGTATCAA GCCATTCGAT
CGTTACGACG ATTGGCAGCA TAAAACCGCT TATGCCGATT TCACCGGTGA ATTTGGATTG
GCGGGAATGC AGCATCAACT GCTGATTGGG GCTAACTATC TCGATTATTT CTATCAGCAA
CAAATTCACC GTGGGGCAGC TCAAACGGTT ATTCCTGGGC AACCAGTTAT TCAACCTGCT
CTCGATTACC ACACAAAACC CAAAGGCAAT GCGAGTACCT ATAAGTATTA CGGTTTCTAC
CTGCAGGATT TAATGACGCT TAACGAACAA TGGAAGTTGC TCGCTGGCGT ACGTTACGAC
GAACAGAAGA AAGACGGTGA AGGTGAAAAC AGCTATGCCG TGTCGCCTAA GTTTGGGGTG
ATTTACTCGC CTATGACTAA TGGCAGCGTT TACGTTAATT ACTCAAAGAG CTTCACGCCA
AAAGGTACTG TGAATAACGA GTATGATGTA AATAATAAGC TTAATTTAAA GCCAGAATAC
GGTATTCAAT ATGAAGTGGG CACTAAGTGG GAATTGTTTG ACGATAGTCT GTTATTAACC
GCTGCAGTGT TCGATATTAC ACTTGAGAAC ATCACTATTT CAGAAAAGTT ATCCTCACCA
ATAGGTGATT TTACTGATAT CACCACTCAA GGTGGCGAAC AGAAGCACCG TGGCTTTGAA
GTTGGTGCCC AAGGTCAGTT AGGCGATAGC TGGTTTGTGA CTTCTTCTAT GATGTATTTA
GATGCCGAAT ATAAAACGGG TGCTGGCAAG ATAGATGGGA AAATCTTAGA TGGTAAAACA
CCTGTCGATG CGCCTGAATG GTCGGCGAAT ATCTGGACCC GTTATGAAGT GACAGACAAT
TTTGCGATGA ACTTTGGTGC CATTTATGTG GGTGAGCGCT TCGCCGATAA AGATAACAGC
ATTACTAAAG ACGGCTATGT GCGTTTCGAT ATAGGTGCAG CCTACACTAT GGATATCATG
GGTAAAGATG TGAGCCTTCG TGCCAACGTT AGAAATCTAT TTGATACTGA TTATATTGAT
GGTGGTCAGT ACAATATGGT CACTATCGGC CAAGGCCGTA ACTTTAGTGT TGCTGTTGAA
GCTAAGTTCT AA
|
|---|
| Protein sequence | MVFKYSVLGL AVGSALMAMP VLAEVASDAN IERINVTGRT FNDYKVGTAS GAMRGDIDLM
DTPQSVNVIP DFVTDEQLAT NLAEVLVNDS SVTAGTARWN RQVFSIRGFE LDSGNGYLIN
GHQQWSHYVQ PIETLQQVEV LKGPSSMLYG QSGPGGLVNM VTKKPTYDSM LNLGFDTDGY
GSTRAQLDAG GSLNEAQSIR YRGVLVKQDT KYWREYSAND ENQERDRWLG YLNMEFDLSD
DLLLSVKYDH TQDKAGIDAG GWLDKQGNVI GERKTVWDAP WAFTDNTVSN LGADLTWHMS
DNWKVKAGYN EQQFNRQRFD SAPQYTEDPF TKGYSIKPFD RYDDWQHKTA YADFTGEFGL
AGMQHQLLIG ANYLDYFYQQ QIHRGAAQTV IPGQPVIQPA LDYHTKPKGN ASTYKYYGFY
LQDLMTLNEQ WKLLAGVRYD EQKKDGEGEN SYAVSPKFGV IYSPMTNGSV YVNYSKSFTP
KGTVNNEYDV NNKLNLKPEY GIQYEVGTKW ELFDDSLLLT AAVFDITLEN ITISEKLSSP
IGDFTDITTQ GGEQKHRGFE VGAQGQLGDS WFVTSSMMYL DAEYKTGAGK IDGKILDGKT
PVDAPEWSAN IWTRYEVTDN FAMNFGAIYV GERFADKDNS ITKDGYVRFD IGAAYTMDIM
GKDVSLRANV RNLFDTDYID GGQYNMVTIG QGRNFSVAVE AKF
|
|---|
| |