Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_3413 |
Symbol | |
ID | 5755217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | + |
Start bp | 4028484 |
End bp | 4030538 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641289746 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001555835 |
Protein GI | 160876519 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.341259 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0009308 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAGGCC GTTTTAAGTC ACTGACGTGG AAACAAACTA ACCTAGTCGT ATTTACTGCC CTATTTTTTG CCATTGCCAT TTTTATTGTT GAAATCGCTT TAGTCGTCGT CTCAACCAAA CAACAACTCA CGACTACCCA GCAAGAACTC CTTGATTCAG TTGAACAACC CGCAGCAAAT GCCGTCTGGG CATTGGATGA TAATTTAGCC CGTCAAACCT TAGAAGGTGC CATTAAAGTT GAACATGTCG GCTCGGCAGT GATCGAGCTG GACGATGGTT CCATGTTTGT GTCAGTCAGC AATAATAAAA AGAATAACTC GCAGACTTTT ATCAGCTTAA GTAACAAATT ATTTGATGAT CTTAAAGAAA TCTCTCGCCC GCTGTACCGA CCTTTTTATT TCGAAGGCAC CCAACAACAG CAACTCATTG GCACATTAAC AGTTTTCTAC GATACCCAAG AGCTGACAAA CACCCTTTTC TCGCAGTTAA GATTTAGTTT TTTCGCCACA CTTGCCCGCG CACTCTTACT CACCTTAGTG CTTTCAGTGG TTTTCCATCG CTTCTTAACT CAACCTATCG CCCGTATTAG TGAGGCTATA GATAAGATTG AACCCGACTC ACCGGACGAA AACCTCTTAC CTATGTCCAA TGCGCATAAG GATGATGAAC TTGGCCTAGT GACCTCAAAA TTCAACCAAA TTCTTATCCA ATTTAGCCAA ACCCAATCCA AACTGCGCAA AATGGCGACC CGAGATCCGC TAACGGGTTT ACCGAACCGT ACACTATTGC TCGAAACCAT CGCAGTCACT ATCCAACGTT CGCGTGTACA CAAGCGCAGC TTTGCCTTAA TGTTTATCGA CTTAGATCGA TTTAAGAATA TTAACGATTC CCTTGGCCAC GCATTGGGCG ATCAATTCCT CGCCCGTATC GCCCGTATTC TTGAACGCTT CGTTGGCGAT AAAGGCACAG TCTCTCGCTT AGGTGGCGAT GAGTTTGTGA TTTTAGCCGA CACAGTACAC ACCCCAGATC AAGCCGCTGA CTTTGTTGAT AAGTTACTTA TCCAGCTTAA TGTCCCTATC CAATTAAATG AACATGCGAT TCATCCTGCG GCCTCAATTG GGATATCCAT TTATCCCGAA GACGGTAACA GCGCAGAAGA TTTGATACGT CATGCCGATA TTGCAATGTA CAGCGCCAAA GCTGCAGGCT CGAATCAATG GGCCTTCTTT AAACAACAGA TGACAGAACG CGCCGCTGTG CGTTTACGCA CCGAAGCATC CTTGCATGAT GCGTTAAAAA ACAACGAATT TTTGCTGTAT TTCCAACCTA AACTCGATCT GCAAACGGGC AAAGTGATTG CTTGTGAAGC TCTGATCCGC TGGCAAAAAG ACGGCCGACT CATCAGTCCG GTTTCTTTTA TCCCCGTCGC CGAAGAAACG GGGATCATCA TTCCGATTGG CCGCTGGGTG ATAGAACAAA GTTGCAAAGT CTTAAGGGAG TGGCAGAAGA AATATAACTA TGCCATCCCG ATTGCGATTA ATGTCGCCTC ACAGCAATTC GCCGACGCGA GTTTAGTACC CGATATCAAA CAGATGGCAT TACGTTATCA GATCCAACCC GAACTGCTGG AAATTGAAAT CACTGAAACC TCGCTGATGA ACGACATTGA ACTCGCCATC GCTAAGCTTG AACAACTTAA ATCAGCAGGA TTTGGCATTG CCGTCGATGA CTTCGGCACC GGATATTCAT CACTCTCTTA CCTGCGCCAT TTGCCCATTA CCACCATGAA AATCGACCGC TGTTTCGTGT CCGATTTACC TGGGGATAGC GCAATCGCAT CGACCATTTT GATGTTGGGT AAGCAGCTTA ATTTGACCAT TGTGGCCGAA GGAATTGAAA ACGAGCAGCA ATTGGATTGG TTGAAGGAGA ATCAGTGCCA AGTCGGCCAA GGCTTCTATT TTAGCCAACC CCTGCCCCAA GCGGAATTTG AAGCCCTGTA TATAGCAACA CAGACAGCAA CGATAAGCAC TCTGGATGGC TTACGTGGAG CTTGA
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Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD LKEISRPLYR PFYFEGTQQQ QLIGTLTVFY DTQELTNTLF SQLRFSFFAT LARALLLTLV LSVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH ALGDQFLARI ARILERFVGD KGTVSRLGGD EFVILADTVH TPDQAADFVD KLLIQLNVPI QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVIACEALIR WQKDGRLISP VSFIPVAEET GIIIPIGRWV IEQSCKVLRE WQKKYNYAIP IAINVASQQF ADASLVPDIK QMALRYQIQP ELLEIEITET SLMNDIELAI AKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKENQCQVGQ GFYFSQPLPQ AEFEALYIAT QTATISTLDG LRGA
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