Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_3271 |
Symbol | |
ID | 5755075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 3852945 |
End bp | 3853925 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641289604 |
Product | RpoD family RNA polymerase sigma factor |
Protein accession | YP_001555693 |
Protein GI | 160876377 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.589431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGCA TAAAAAGCAC TGCCGCAGAA GCACTAGTAG ATTTATCCGT AGACACTGTT GACTTCGATC TTGAAAAAGA AGAAGTTGCA TCCGATTTAG TTCAAGAGCT AGGAATAGAG CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CTCAACTTTA CCTAGGTGAG ATTGGTTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAAGCCTTA AAAGGCTGCG CAAAATCCCG TAATCGCATG ATTGAAAGTA ATTTACGTCT GGTCGTAAAG ATTGCCCGTC GTTACAACAA TCGTGGTTTA GCACTGCTTG ATCTTATCGA AGAAGGCAAC TTAGGTTTAA TTCGTGCCGT TGAAAAATTT GACCCTGAAA GAGGTTTCCG TTTTTCAACC TATGCGACTT GGTGGATTAG ACAAACCATT GAGCGCGCTA TTATGAATCA GACTCGTACG ATTCGTTTGC CTATTCATGT TGTTAAAGAA CTTAACGTTT ACTTGCGTAC CGCTCGCGAG TTAGCACAAA AACTCGATCA CGAACCAACG GCCGAAGAAA TTGCCGAAAA ACTACAAGTG TCGAGTGCAG ATGTCAGCCG TATGCTGAAG TTGAATGAGA AAATCACCTC TGTCGATACG CCTTTGGGGG GCGATAATGA CAAGGCGCTG CTGGATATTT TAGCCGATGA TGATAACGTT GGCCCTGACT ATAAAGTGCA AGATGAAGAT ATTTCTAATT CAGTGGTTAA ATGGCTCAAT GAGTTAAACA CTAAACAAAG AGAAGTGTTA GCCCGCCGTT TTGGTCTGTT AGGTTATGAA CCTTCTACAC TCGAAGATGT GGGTGCTGAG ATTGGTTTGA CTCGTGAACG TGTACGTCAA ATCCAAGTAG AAGCATTGAA ACGTTTACGC GACTTATTAG GATCTCAAGG TTTATCTGTT GAAGCATTGT TTAGAAACTA A
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Protein sequence | MSRIKSTAAE ALVDLSVDTV DFDLEKEEVA SDLVQELGIE QQVQDDLQKN LDATQLYLGE IGFSPLLSAE EEVYFSRKAL KGCAKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE LAQKLDHEPT AEEIAEKLQV SSADVSRMLK LNEKITSVDT PLGGDNDKAL LDILADDDNV GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ IQVEALKRLR DLLGSQGLSV EALFRN
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