| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2956 |
|---|
| Symbol | |
|---|
| ID | 5754747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 3507810 |
|---|
| End bp | 3508748 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641289280 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001555382 |
|---|
| Protein GI | 160876066 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0591217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATA TAAACTCAAT CAACATGCGA GCGTTAAAGT TTTTTATCGG CGTTTATGAC
AGCAAAAGCT ATTCAGTTGT GGCTCGAAAG GAAGGCGTCT CTCCCTCGAT GATTTCCAGA
GTCATCAGCC AACTAGAAGA TTCTCTGGGA CAGCAGCTGT TTTATCGAAA TACCAGGGCA
ATCATACCCA CGGAATCGGG CAGGATTTTC ATTGAATATG CGCGTTCCAT GGCAGAGCAA
CTGAATGAAG TCCGCAATGA ATTATTAGAT AGGACGATAG AACCTAAGGG ATTGATCAGA
ATTAATGCCC CGGTTTTTTT CGGGCAGCGA CATATTGCGC CTTGGTTAGC GGGGTTTTTA
AGGCGATATC CGCAGGTACA AGTGGAACTC ACACAAACAG ACGATTATAT CGATCCGCAT
GTTAGTGCCG CCGATATTAT CTTTCGTATT GGCACTTTGG TTGATTCATC ACTCCACTCA
AGAATACTGG GAAGCCAAAC CTATCATCTT GCGGCGTCCA AAGCGTATAT AGCACTGCAT
GGCATGCCCA CTGAACCCGC CGATCTAAAA AACCATCAAT GCCTAGTCTA TAGCGGATCT
TCGGGTCAAA ATCGCTGGTT TTTTAACAAG AACAAGACGA CATGGCTGCA TCAACCCATC
ACCCCAATCC TCACCTCAAA TAATGCGGAA ACATTACTCA TAGCCGCATT AAATGATATG
GGAATCGTCC TCTTTCCTGA CTGGTTAATC GGTGACTCTC TTAAAAATGG ACAACTTATT
TCATTACTCA CGGACTGCGA ATCAGCGATA AAAATTGATC AGCATTACAT TACTGCCATT
TATCCAAACT CCCGCACTCC CTCATTGAAT GTCCGCGCCG TAATTGACTA CTTTCTTGAG
GTGTATGGCA ATCCGCCCTA CTGGAAATAT CAAGGTTAG
|
|---|
| Protein sequence | MNDINSINMR ALKFFIGVYD SKSYSVVARK EGVSPSMISR VISQLEDSLG QQLFYRNTRA
IIPTESGRIF IEYARSMAEQ LNEVRNELLD RTIEPKGLIR INAPVFFGQR HIAPWLAGFL
RRYPQVQVEL TQTDDYIDPH VSAADIIFRI GTLVDSSLHS RILGSQTYHL AASKAYIALH
GMPTEPADLK NHQCLVYSGS SGQNRWFFNK NKTTWLHQPI TPILTSNNAE TLLIAALNDM
GIVLFPDWLI GDSLKNGQLI SLLTDCESAI KIDQHYITAI YPNSRTPSLN VRAVIDYFLE
VYGNPPYWKY QG
|
|---|
| |