| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2886 |
|---|
| Symbol | |
|---|
| ID | 5754664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 3437813 |
|---|
| End bp | 3438484 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641289197 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001555312 |
|---|
| Protein GI | 160875996 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.315212 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATAT TTGATTACCA GCCCCCAGCA GTTCCTTGGT TAGACATCCG CTATAAAGAT
AGAGATCTGA TTATCATCAA TAAACCCTCG GGCTTATTGT CGAATCCGGG TCGAGCGGCT
CACACCTTCG ATTGCGCGTT AACCCGCTTA CAAACCCTTT ATCCAGAAAC GATTTTAGTG
CATCGGCTCG ACTGCGCGAC CTCGGGCATT ATGGTGTTCG CCCGTAATAA AAAAGCCGAG
TCGCATTTAA AAACGCAGTT TCAAGATAGG CAGAGTAAGA AAGTCTATAT TGCAGAAGTG
ATGGGACATG TTCCGCAGGA ACAGGGCATG ATTGACCTCG CGATTGCGCC AGACACTGAG
CATCCGCCCT ATCAAAAGAC GCTACAGGCT GGAGAGACTG GCGGTAAAAG CGCTCTCACC
TACTACCGTG TACTAGAACG CAGAGAAAAC AGCACCTTAG TCGAGCTTTC GCCAGAAACA
GGCCGCACCC ATCAATTGCG TGTGCATATG CTTGCCCTAG GCCATGCGAT TTTAGGCGAT
GAGTTTTACG GTGATGCCGA GGTTATCAAA GCCGCACCGC GTTTATGCTT ACATGCACAA
AGCTTAAGTC TGACTCATCC GTATTCGGCT AAACCGCTCT TTTTTAGCAG TAAACATCCC
TTTAGCGAAT AA
|
|---|
| Protein sequence | MQIFDYQPPA VPWLDIRYKD RDLIIINKPS GLLSNPGRAA HTFDCALTRL QTLYPETILV
HRLDCATSGI MVFARNKKAE SHLKTQFQDR QSKKVYIAEV MGHVPQEQGM IDLAIAPDTE
HPPYQKTLQA GETGGKSALT YYRVLERREN STLVELSPET GRTHQLRVHM LALGHAILGD
EFYGDAEVIK AAPRLCLHAQ SLSLTHPYSA KPLFFSSKHP FSE
|
|---|
| |