| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2511 |
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| Symbol | |
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| ID | 5754270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | + |
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| Start bp | 2961952 |
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| End bp | 2965449 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641288805 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001554939 |
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| Protein GI | 160875623 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00100471 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.47703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCACA TATCAGCCCT AACGCCGCCA GCCGTCAAAA ATGGCAATCA AATTCAGACT
CTGTCCACCG TGGGCGGCGT TTGCCAAGCC GTTACACTCG CCAGTTTAGC GCGTCAACAT
AAGGGGACGA CCTTAGTTGT CACCAGTGAT ACGCCAAGCG CCTTAAGCTT AGAGCTAGAA
CTGAGTTATT TGCTCGGTAA AACAGGCATT AAGGTCAGAT TATTCCCTGA CCGCGAAACC
TTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATCT CCCAGCGACT CGAAACCCTG
TCGCAGCTGT CTCAAATTGA GCAAAACATC GTTATCGTGC CCGTCACGAC CTTAATGATG
CGCCTGCCAC CTAAGGCCTA TTTAAGCGCT AACGTGTTTG TGCTGAAAAA AGGTGATAGC
TACAAATTAC ACGATGTACG CCAGCATTTA ACCGACACTG GCTACCATTC GGTGGAGCAA
GTGTATGAAC ACGGCGAGTT TGCGATTCGC GGCTCGATTC TGGATATCTT CCCCACTGGG
ATGAACATGC CACTGCGCAT CGAGCTATTC GATGAAGAAG TGGAAACCAT CCGCCATTTT
GATCCCGAAA CCCAACGTTC ATTGCAGCCT GTCGACTCGA TTCGCCTATT GCCCGCGAAG
GAATTTCCGA CCGACAGCTC AGCCATCGAA GGCTTTAGAC AAAGGTACCG TCGCCGTTTT
GAAGTCATAG TCAAAGAGCC AGAATCAGTT TATCAGCTGG TGAGCCGCAA CTTGATGCCG
GCGGGGATAG AAAACTATCT GCCGCTGTTT TTTGATGACA CCGCCACCCT ATTCGATTAC
TTGCCCAAGG ATACTCAGTT AGTCACTTTA GGGGATATCG AAAAGTCGGC GCGCGCGCAT
CTGCAAGAAG TCGAACACCG CTATCAAGAC AGGCGCGTCG ATCCACTGCG GCCGCTACTG
GCACCTAAAG AGCTGTATTT ACTCATCGAA GAGTTATTTG CCGCCTTTAA ACCGCTGCCA
CGTTACCAGA TGCAAGTGCC GACGGATGGC GCTGAAGCGA CAAAAGCTTT GGTGATTGCC
GCCAGCACCC TGCCCGACAT CAGCGCCAAC CATAAATTAA AGCAACCACT GTTAGCGCTG
CAAGATTATG CCAGCAGCGC CAAACGCATG TTGTTTAGTG CCGAGTCCGA GGGTCGCCGC
GAAGCGCTGC TTGAATTGCT CGCAAAAATT CAGTTAAAAC CTGCGCTGTT TAACCATTTT
GATGAATTTA TTCAAAGTGA TGCCAAGTTA GGGCTCATCG TGTCGCCGCT GTCACGCGGT
TGTTTACTGC AGATCAGCGC TAAAGATGGC ATCAGTATCA TTTGTGAAAC TGAGCTCTTC
GGCCATCGAA TTTCCCAGCA ACGTCGCCGT GAAAAACAGC GTCAGATCAG TAACGATGCC
CTGATTAAAA ACTTGGCCGA ACTCAAAGTC GGCCAGCCCA TAGTGCATTT AGAACACGGT
GTTGCCCTCT ATAAAGGCTT AGTCACGCTA GATACAGGCG GACTGGTCGC CGAATACCTG
CAATTGGAAT ACGCCGGCGG CGATAAACTG TATGTGCCAG TGTCTTCATT GCACCTTATC
AGCCGCTACA GTGTTGGCGC CGACGAAGAC GCCCACTTAA ATAAACTCGG CAATGAGACC
TGGGCTAAAG CCAAGAAAAA AGCCATTGAA AAAATCCGCG ACGTCGCGGC CGAGCTGCTC
GATGTATATG CCCGTCGCCA ATCTCGTCCC GGCGAAAGCT GCGAGATTGA CGAAGAAGAA
TACGCCCAAT TCGCTCGCGG TTTCCCCTTC GAGGAAACCG TCGATCAAGA AAGCGCCATT
ATCGCCGTGT TAGCCGATAT GCAATCGCCG ACCGCAATGG ACAGATTAGT CTGTGGCGAT
GTGGGCTTTG GTAAAACCGA AGTCGCCATG CGCGCCGCCT TTGTGGCCGT CAACGCCGGT
AAGCAAGTGG TCGTGCTGGT CCCGACCACA TTGCTTGCCC AGCAACACTA TGAAAACTTT
AAAGACAGGT TTGCCGACTG GCCCGTAGTC ACCGAAGTGA TGTCACGCTT TCGCACCGCT
AAAGAGCAGA CTCAAGTGCT GCAGCAATTG GAAGAAGGCA AAGTCGATAT CGTTATCGGT
ACTCACAAGT TATTGCAATC TGAGGCCAAG TTTGAAAACT TAGGCCTGCT GATCATCGAC
GAAGAACACA GATTCGGTGT ACGTCAAAAA GAGAAAATCA AGGCCCTGCG TGCCAACGTG
GATATCCTAA CCCTGACCGC AACGCCTATT CCACGGACCT TAAATATGGC CATGTCGGGC
ATGCGCGATT TATCGATTAT CGCCACCCCG CCCGCCAAAC GTTTAGCGGT AAAAACCTTT
GTGCGCGAAT CCGATCCTGC AACCGTGCGC GAGGCCATTT TGCGGGAAAT TCTCCGTGGC
GGCCAAGTGT ATTACCTGCA CAATAATGTT GAAAGTATTG AAAAATGTGC CCAAGGCATT
ATCGATTTAC TGCCAGAAGC GCGGGTAGTC GTCGCCCACG GTCAAATGCG TGAGCGCGAT
CTTGAGCGGG TGATGTCTGA CTTTTATCAC CAAAGATTCA ATGTGTTAGT CTGTACTACT
ATTATCGAAA CTGGTATCGA CGTCCCGAGT GCCAACACCA TTATTATTGA GCGCGCCGAT
ACCTTTGGTC TGGCGCAGTT ACACCAATTA CGCGGCCGCG TCGGACGCTC GCACCATCAG
GCTTATGCCT ATTTGATGAC GCCGCATCCT AAACGTATGA CTCCCGATGC GCGTAAGCGT
TTAGAAGCCA TTGATGCCCT TGAAGATCTC GGTGCAGGCT TTATGCTCGC GACCCAAGAT
TTGGAGATCC GCGGTGCAGG TGAACTCTTA GGTGATGAGC AGAGCGGCCA TATTTCGAAA
ATTGGTTTTA GCTTATACAT GGAAATGCTC GAAGCGGCAG TCAAAGCTTT AAAACAAGGC
AAAGAGCCAT CGCTGGCGCA AATGCTGAAT CAACAATGTG AAATTGAACT GCGTATCCCC
GCCCTACTGC CTGAGGCCTA TGTGAGCGAC GTGAATATTC GTCTATCGCT CTATAAACGC
ATCGCAGGTT GCGAAACCGA AGCGGCGCTG GATGAACTAA AAGTCGAATT GATCGACCGT
TTTGGCCTAT TACCCGAACC GACGCGCAAC TTAATGGAAA TGACCCTCTA TAAACATGAG
GCGACTCGCT TAGGGGCGAC TAAAATAGAA GTGCACAGTA AAGGTGGCAG CATCGAATTT
AGTCATGATC ACGTCATCGA TCCTATGTTT ATTATTGGAT TACTCCAAAG CCAGCCACAA
ATCTATCGAA TGGAAGGACC GAATAAGTTA AAGTTCAGCC TTGCGGCCGA AACCAGTAAA
GACAGGCTCG CTTTGGTCAA ACTCTTGCTC GAACAACTAT CTCAACATCA ATCGCAACAT
CGTCTTGGAG ATAAATAG
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| Protein sequence | MTHISALTPP AVKNGNQIQT LSTVGGVCQA VTLASLARQH KGTTLVVTSD TPSALSLELE
LSYLLGKTGI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQLSQIEQNI VIVPVTTLMM
RLPPKAYLSA NVFVLKKGDS YKLHDVRQHL TDTGYHSVEQ VYEHGEFAIR GSILDIFPTG
MNMPLRIELF DEEVETIRHF DPETQRSLQP VDSIRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPKDTQLVTL GDIEKSARAH
LQEVEHRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQMQVPTDG AEATKALVIA
ASTLPDISAN HKLKQPLLAL QDYASSAKRM LFSAESEGRR EALLELLAKI QLKPALFNHF
DEFIQSDAKL GLIVSPLSRG CLLQISAKDG ISIICETELF GHRISQQRRR EKQRQISNDA
LIKNLAELKV GQPIVHLEHG VALYKGLVTL DTGGLVAEYL QLEYAGGDKL YVPVSSLHLI
SRYSVGADED AHLNKLGNET WAKAKKKAIE KIRDVAAELL DVYARRQSRP GESCEIDEEE
YAQFARGFPF EETVDQESAI IAVLADMQSP TAMDRLVCGD VGFGKTEVAM RAAFVAVNAG
KQVVVLVPTT LLAQQHYENF KDRFADWPVV TEVMSRFRTA KEQTQVLQQL EEGKVDIVIG
THKLLQSEAK FENLGLLIID EEHRFGVRQK EKIKALRANV DILTLTATPI PRTLNMAMSG
MRDLSIIATP PAKRLAVKTF VRESDPATVR EAILREILRG GQVYYLHNNV ESIEKCAQGI
IDLLPEARVV VAHGQMRERD LERVMSDFYH QRFNVLVCTT IIETGIDVPS ANTIIIERAD
TFGLAQLHQL RGRVGRSHHQ AYAYLMTPHP KRMTPDARKR LEAIDALEDL GAGFMLATQD
LEIRGAGELL GDEQSGHISK IGFSLYMEML EAAVKALKQG KEPSLAQMLN QQCEIELRIP
ALLPEAYVSD VNIRLSLYKR IAGCETEAAL DELKVELIDR FGLLPEPTRN LMEMTLYKHE
ATRLGATKIE VHSKGGSIEF SHDHVIDPMF IIGLLQSQPQ IYRMEGPNKL KFSLAAETSK
DRLALVKLLL EQLSQHQSQH RLGDK
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