| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2509 |
|---|
| Symbol | |
|---|
| ID | 5754268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 2959880 |
|---|
| End bp | 2961112 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641288803 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001554937 |
|---|
| Protein GI | 160875621 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.497071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.173381 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAG GATTTCCTTT CTATATTGGT TACCGTTATT GGCGGGCCAG AAAAGCGAAC
GCGTTCGCGT CGTTCATTAC TCTATTTGCC GTTTCAGGCA TTTTTTTAGG CGTTGCCGCG
CTCATTGTCG TGAGCTCTGT GATGAATGGT CTCGAAGGCC AACTCAAGCA ACGTATCTTA
GGCGCAGTAC CGCAATTAAC TCTTTATAGT GAAGCGCCTT TAGTCGATTG GACTGAGCAG
GCGAGTGCGC TTAAAGCCTT ACCTGGCGTA TTAGGCGTGA CGCCGAGCGT GTCGACGCAG
GCCATGGTGC AATCGGCGGC GAGTATTCGT GCTGTACAGG TTTATGGCGT GTTCCCCGAG
TTAGCGGAAA AGTTATCTTC GGTTGCCCAG CACACTTACT CAGGTGCATT TGAGCAGCTG
ACGAGCGGCG ACTACAAGGT GATTTTAGGC TCTGAGCTGG CAAGGCAACT TAAAGTCGCC
CCTGGTGATA CGGTGCGATT ATTGAGTGGC GATGGCGTGG TGTATTCGCC CTTAGGTCCA
GTGCCGAGTC AACGTAAGTT TTTGGTCTCG GGCATTTTTG AAATGGGCTC TCAGGTCGAT
GCGGGCGTGG CATATATCCA TTATCAAGAT GCGAAACGGC TGATGCGCCA ACCAAGTAAA
GAGATCAGTC AACTTAGGCT TTATTTAGCG GATCCTTTCA GCGCACCGGC TTTAGCGCCT
AAAGTGCAGG ATATATTAGC TAAACAAGGT TTGAAGGCGA CAACCAGCGA TTGGCGTGAT
ACCTATGGCC ACTTGTTTGG CGCGGTCAAG ATGGAAAAGA ACATGATGTC ACTGATGTTG
AGTCTGATTG TGGCCGTGGC CGCATTCAAT ATCGTCTCGG CACTGGTCAT GATGGTGGTC
GATAAAACCA CAGATGTGGC GGTGCTCAAA ACTCAAGGCG TGACCACACC CGCCGTGATG
GGCATTTTTG TGGTGCAAGG GTCGCTCAAT GCAGTGCTCG GTTTAGTGCT GGGGCTGGCG
GTTGGGATAC TCATCACCTT GAATCTGAAT GGCATTATGA CCACCTTAGG GATTTCTATT
CTAGGCGTAG GGCAAAGTTT GCCGGTGAAA CTGGAATTGA TGCAGTTGTC TGTGATCGTG
ATTGGTACGC TGCTGGTGAC CCTGCTGGCG ACCTTATATC CCGCACTGCG CGCCGCCAAT
GTGCAACCCG CGACTGCGCT CAGATATGAG TAA
|
|---|
| Protein sequence | MNPGFPFYIG YRYWRARKAN AFASFITLFA VSGIFLGVAA LIVVSSVMNG LEGQLKQRIL
GAVPQLTLYS EAPLVDWTEQ ASALKALPGV LGVTPSVSTQ AMVQSAASIR AVQVYGVFPE
LAEKLSSVAQ HTYSGAFEQL TSGDYKVILG SELARQLKVA PGDTVRLLSG DGVVYSPLGP
VPSQRKFLVS GIFEMGSQVD AGVAYIHYQD AKRLMRQPSK EISQLRLYLA DPFSAPALAP
KVQDILAKQG LKATTSDWRD TYGHLFGAVK MEKNMMSLML SLIVAVAAFN IVSALVMMVV
DKTTDVAVLK TQGVTTPAVM GIFVVQGSLN AVLGLVLGLA VGILITLNLN GIMTTLGISI
LGVGQSLPVK LELMQLSVIV IGTLLVTLLA TLYPALRAAN VQPATALRYE
|
|---|
| |