| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1576 |
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| Symbol | |
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| ID | 5753308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | + |
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| Start bp | 1898027 |
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| End bp | 1900003 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641287848 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001554009 |
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| Protein GI | 160874693 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.823699 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATCA AGTCGAGTAT TAATCCGCCG GTATTTTATT CGTCGGTCTT TTTCATCATC
TTGATGGTGA TGATTTGTGC AGTATGGCCC ACAGAGGCTA ACACCGTTTT TAGATCAATA
CAGTCATGGA TAGAAGTGAA AGCCGGTTGG CTTTACATTC TGAGCGTGGC GTTTTTCCTG
ATTTTTATCA TCTTCGTCAT GGTCAGTCGC TTCGGCGATA TCAAACTCGG GCCAGATCAT
TCTGTGCCGG ATTACAGTTA TAAAAGCTGG ATTGCCATGT TGTTTTCGGC AGGTATGGGT
ATTGGCCTGA TGTTCTTTGG GGTTGCCGAA CCTGTAATGC ACTATCTGGC GCCGCCAGAT
GCTACGCCTG AGAGTCTCGC CGCCGCTAAA GAGGCGATGA AGATTACTTT CTTCCATTGG
GGACTGCATG CTTGGGCGAT TTATGCCGTA GTGGCATTGA GTCTGGCCTA CTTCTCCTAT
CGTCATAAGT TACCGCTACT GCCACGAAGC GCCCTTTATC CCTTAATTGG TGAACGTATT
TATGGTCCTA TTGGCCATAT TGTCGATACC TTTGCCGTGC TCGGCACTAT GTTTGGGGTG
GCGACATCAC TGGGCTTTGG GGTGTTGCAG GTTAACTCGG GTCTGAGTTA TCTATTTGAA
GGTTTACCTA ATAATGCTGT AGTGCAAGTG TGCTTGATCA TCGGCATTAC CTTGCTCGCG
ACCTTGTCGG TGTTTTCTGG CCTCGACAAA GGCGTCAAAC GCTTAAGCGA ACTCAATCTT
GGCCTCGCGA TTATTTTATT GCTTATCGTC TTGATCTTGG GCCCTACAGT CATGCTGTTG
CAGGCCTTTG TGCAAAACAC CGGCAGTTAC TTAAGTGATT TGGTTGGCAA AACCTTTAAC
TTGTACGCCT ATCAACATAA GGAAGATTGG CTCGGCGGCT GGACCTTGCT CTATTGGGGC
TGGTGGATTT CTTGGTCACC TTTTGTCGGT ACCTTTATTG CGCGTGTGAG TCGCGGTCGT
ACCATCCGTG AGTTTTTGAT TGGTGTGTTA TTTGTGCCAT CGGCGCTGAC CTTCCTGTGG
ATGACAGTGT TTGGTAACTC GGCGATTGAT TCGATTATGA ATCAAGGCGC GACCTACCTT
GCTGAAGCGG TGAATACCGA TGTGTCAGTG GCCTTGTTTG TGTTTTTCGA GCACATGCCG
TTCCCGACCT TACTCTCAGG GATTGCGATT TGTTTAGTGG TGACCTTCTT TGTGACTTCG
TCGGATTCGG GGTCCTTAGT GATTGATAAT CTGACCTCGG GCGGCGATAA CAATGCGCCC
GTATGGCAGA GGATTTTCTG GGCACTGTTG CAAGGGGTTG TGGCCTCGGT ATTGTTGTTA
GCTGGTGGTT TACAGGCGCT GCAAACGGCG GCTATCGCCA GCGCCATGCC GTTCCTCGTG
GTGATGTTAT TCATGTGTCT GGGATTATTT AAAGCCCTGA AGAATGACTG GCTTAAGATC
AACAGTGTGC AGTTACACAA TACCAGTGTG CAGTACGCCA AAACCAACAT GAGCTGGGAA
GAGCGCATTG GCGTGCTCGT GTCGCATCCC ACCCATGAAG AAGCGCAAGT GTTCTTGAAC
AATGTTGCGA CGCCCGCTTT ATCTAAGGTG TGTCAACACT TTATGACCAA AGGTATAGTG
GCCGATCTCG AATACTTAGA TGGCCGCGTA CGTTTGGTGA TTAGCAACGA GGTGAACTTG
CCATTTGTTT ACGGAGTACG CACCCGTTGT TTCGAAATCA CTAACCCGAT AGGGACTGAA
ATCGAGCAGG GTAATACCTT GTATTACCGC GCCGAAGTGT ATTTAGAACA AGGTGGTCAA
CATTACGATG TGATGGGGTA TACCGAAGAG CAAATCCTCG CGGATGTGGT GACTCAGTAT
GAAAAATACT TACACTACTT GCATCTGTCG AATGCCGATC ATGCCCACAT AAGCTAA
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| Protein sequence | MSIKSSINPP VFYSSVFFII LMVMICAVWP TEANTVFRSI QSWIEVKAGW LYILSVAFFL
IFIIFVMVSR FGDIKLGPDH SVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD
ATPESLAAAK EAMKITFFHW GLHAWAIYAV VALSLAYFSY RHKLPLLPRS ALYPLIGERI
YGPIGHIVDT FAVLGTMFGV ATSLGFGVLQ VNSGLSYLFE GLPNNAVVQV CLIIGITLLA
TLSVFSGLDK GVKRLSELNL GLAIILLLIV LILGPTVMLL QAFVQNTGSY LSDLVGKTFN
LYAYQHKEDW LGGWTLLYWG WWISWSPFVG TFIARVSRGR TIREFLIGVL FVPSALTFLW
MTVFGNSAID SIMNQGATYL AEAVNTDVSV ALFVFFEHMP FPTLLSGIAI CLVVTFFVTS
SDSGSLVIDN LTSGGDNNAP VWQRIFWALL QGVVASVLLL AGGLQALQTA AIASAMPFLV
VMLFMCLGLF KALKNDWLKI NSVQLHNTSV QYAKTNMSWE ERIGVLVSHP THEEAQVFLN
NVATPALSKV CQHFMTKGIV ADLEYLDGRV RLVISNEVNL PFVYGVRTRC FEITNPIGTE
IEQGNTLYYR AEVYLEQGGQ HYDVMGYTEE QILADVVTQY EKYLHYLHLS NADHAHIS
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