| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1478 |
|---|
| Symbol | dapD |
|---|
| ID | 5753209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 1779019 |
|---|
| End bp | 1779843 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641287749 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_001553911 |
|---|
| Protein GI | 160874595 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG TATTGAGGCG GCTTTTGAAG CTCGCGCCGA CATCACGCCA
AGCACAGTTG ACGCCAGCGT GCGTGACGAT GTGCAAAATG TCATCAATAT GCTCGACAAA
GGTGAAGTCC GTGTCGCCGA GAAAATCGAC GGACAATGGC ATGTACACCA ATGGCTGAAA
AAGGCGGTAT TACTGTCCTT CCGTATTTTC GATAACGTGG TTATCGATGG CGCCGAAACC
AAATACTTCG ACAAAGTGCC GTTAAAATTT GCCGAATATG ATGAAGCTCG CTTTAAAGCG
GAAGCCATTC GTGTAGTGCC GTCTGCCACA GTGCGTAAAG GCTCATTCAT AGGTAAAAAT
ACCGTGTTGA TGCCATCCTA TGTGAACTTA GGCGCCTATG TTGATGAAGG CACTATGGTT
GACACTTGGG CGACCGTTGG CTCATGTGCA CAAATCGGTA AAAACGTGCA TTTATCTGGC
GGCGTAGGTA TTGGTGGCGT ACTTGAGCCA TTACAAGCGG GCCCAACCAT CATCGAAGAT
AACTGCTTTA TCGGTGCGCG TTCTGAGATT GTTGAAGGCG TTGTGGTTGA AGAAGGCTCA
GTGATTTCTA TGGGCGTATA TATCGGCCAA AGCACTCGAA TTTATGATCG CGAAACTGGC
GAAGTGCATT ACGGTCGTGT ACCAGCAGGT TCCGTTGTCG TTTCTGGCAA CCTGCCCTCT
GCCTGTGGCA AGTACAGCCT CTATGCCGCC ATTATCGTTA AGAAAGTGGA TGCAAAAACC
CGCGGTAAAG TGGGTATTAA CGAATTACTA CGTATTGTTG ATTAA
|
|---|
| Protein sequence | MEALRQRIEA AFEARADITP STVDASVRDD VQNVINMLDK GEVRVAEKID GQWHVHQWLK
KAVLLSFRIF DNVVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS
ACGKYSLYAA IIVKKVDAKT RGKVGINELL RIVD
|
|---|
| |