Gene Sbal195_1319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_1319 
Symbol 
ID5753047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009997 
Strand
Start bp1568031 
End bp1568681 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content49% 
IMG OID641287589 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001553754 
Protein GI160874438 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0542522 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000972679 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGATACGC AAAACAACAT CATCAGTGTC GGCTTAGTAG AAGATCAACA ATTGGTTCGC 
CAAGGTATCG CTAGCCTGCT CGCCATTTCC GACAACATTC GCGTGTTGTG GCAGGCTGAA
GACGGCCAAG ACGCACTCAG CCAACTCGAC AATAATCCTG TCGATGTGCT GCTCAGCGAT
ATTCGCATGC CAAATCTTGA TGGCATCGCC ATGCTCAAAC AGATACGTCA GAGTGCCAAT
AGCTTACCTG TCATCATGTT AACCACCTTC GATGACAGTG AGTTATTCCT CAATAGTTTG
CAGGCGGGAG CCAACGGCTT TTTGCTCAAG GACGTGTCAC TCGATAAGTT ACTGCACGCC
ATCGAAACCG TCGCCAAAGG CGGCTACTTG ATTGAACCTT CGGTACTCAA ACAGATGAGT
GAGCCTAAAC CTGCACCTAG CGTTGGGGAA ACTAGAAATG AATTATTGTC GGAACGGGAG
CGGGAAATTC TCAGTTTTAT GGCGGGCGGC TTCTCCAACA AGGAAATCGC CAATGCAGTA
TTTTTAGCCG AGGGCACAGT GAAAAATCAT GTCTCTAACA TACTCACTAA ACTCGATTGC
CGAGACCGCA CCCAAGCGGT ACTCAAGGGC TTACAACTGG CGTTGATTTA A
 
Protein sequence
MDTQNNIISV GLVEDQQLVR QGIASLLAIS DNIRVLWQAE DGQDALSQLD NNPVDVLLSD 
IRMPNLDGIA MLKQIRQSAN SLPVIMLTTF DDSELFLNSL QAGANGFLLK DVSLDKLLHA
IETVAKGGYL IEPSVLKQMS EPKPAPSVGE TRNELLSERE REILSFMAGG FSNKEIANAV
FLAEGTVKNH VSNILTKLDC RDRTQAVLKG LQLALI