| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1221 |
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| Symbol | |
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| ID | 5752949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | - |
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| Start bp | 1456200 |
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| End bp | 1458083 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641287491 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001553656 |
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| Protein GI | 160874340 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.104356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.675776 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAAGTG TCCGTCGTTG TAACAGTTTC CCAACTTGGA TGATATCTAT GGATCATACT
CCGCAGTCGC AACTTAAGCT GTTGCTTGCC AAAGGTAAAG AGCAAGGTTA CTTAACCTAT
GCAGAAGTGA ACGATCACTT ACCTGCAGAC ATGGTCGATT CTGACCAGAT CGAAGATATT
ATCCAGATGA TAAATGACAT GGGTATCCGG GTGTTCGAAG AAGCCCCTGA TGCCGATGAC
ATGATGATGT CGGAAGACAA CACAGACGAA GATGCCGCTG AAGAAGCCGC TGCCGCACTG
GCAACAGTAG AAAGCGAACT TGGCCGCACA ACCGATCCCG TGCGCATGTA CATGCGTGAA
ATGGGTACCG TTGAGCTTCT GACCCGCGAA GGCGAAATTG TTATCGCCAA ACGCATCGAA
GAAGGCATCA ACACAGTTCA AAGTTCAGTC GCCGAATACC CACAAGCGAT CGCTATGATC
CTTGAGCAAT TCGACCAATT TGAAGCCGAC GAACTGCGCT TATCTGATAT TATCTCTGGA
TTTGTTAACC CTGACGAAGA CGTTGCACCG ACCGCCACTC ACATCGGCTC AGAATTATCT
GAAGAAGAGC TGGAAGATGA AGATGACGAA GAAGATGACG ACGACACTGA AGATGAAGAA
GAAGGCAACA AAGGGCCTGA TCCTGAAGAA GCACGCGAAA GATTCGGTCA ACTGAGAACT
GCCTACGAAA GTGCACTGAA AATTATCGAA GCTAAGGGCC GTGAACACCC TGAATCGGTA
AAAGCACTAT TCGAAATTGG TGAAATCTTC AAAGAATTCC GCTTAGTACC TAAACAGTTT
GACCGTTTAG TGAAAAGCAT GCGCACTATG ATGGATCGCG TACGTGTTCA AGAACGTTTA
GTGTTAAAAC TGTGCGTTGA ACAAGCCAAA ATGCCGAAGA AAAACTTCGT CAAACTCTTC
ACTGGCAACG AAACCAACCT CGATTGGTTC AACACTGAGA AAGCCTCAAC TAAACCTTAT
GCCGAAGGCC TAAGAATGGT TGAAGACGAC GTGATCCGTT GTCGTACTAA GCTTGCAGCA
GTTGAAGAAG AAACCGGCTT AGCAATTTCT GCCATTAAAG ACATCAACCG TCGTATGTCA
ATCGGTGAAG CTAAAGCCCG CCGTGCGAAG AAAGAAATGG TTGAAGCAAA CTTACGTCTG
GTAATTTCTA TCGCGAAGAA ATACACCAAC CGTGGTTTGC AATTCTTGGA CTTAATCCAA
GAAGGTAACA TTGGCTTGAT GAAAGCCGTG GATAAATTCG AATACCGTCG TGGCTATAAG
TTCTCGACCT ATGCAACTTG GTGGATCCGT CAGGCGATTA CTCGTTCTAT TGCCGACCAA
GCGCGTACGA TCCGTATTCC AGTACACATG ATCGAAACGA TCAACAAGCT GAACCGTATC
TCTCGCCAAA TGCTACAGGA AATGGGCCGC GAGCCTTCAC CTGAAGAACT GGCTGAGCGT
ATGATGATGC CGGAAGATAA GATCCGTAAG GTACTGAAAA TCGCTAAAGA ACCTATCTCC
ATGGAAACCC CAATCGGTGA CGATGAAGAT TCGCATTTAG GTGATTTTAT CGAGGATACT
ACCCTCGAAC TACCACTGGA TTCAGCGACC AGCGAAAGCT TGAAAAACGC CACTCACGAA
GTGTTAGCTG GTCTAACCGC CCGTGAAGCG AAAGTACTGC GTATGCGTTT TGGTATCGAT
ATGAACACTG ACCACACACT TGAAGAAGTG GGTAAGCAGT TCGACGTGAC CCGTGAACGT
ATTCGTCAGA TTGAAGCTAA GGCACTGCGC AAACTGCGTC ACCCTTCACG CTCAGAAATC
TTAAAATCAT TCCTAGATGA ATAG
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| Protein sequence | MLSVRRCNSF PTWMISMDHT PQSQLKLLLA KGKEQGYLTY AEVNDHLPAD MVDSDQIEDI
IQMINDMGIR VFEEAPDADD MMMSEDNTDE DAAEEAAAAL ATVESELGRT TDPVRMYMRE
MGTVELLTRE GEIVIAKRIE EGINTVQSSV AEYPQAIAMI LEQFDQFEAD ELRLSDIISG
FVNPDEDVAP TATHIGSELS EEELEDEDDE EDDDDTEDEE EGNKGPDPEE ARERFGQLRT
AYESALKIIE AKGREHPESV KALFEIGEIF KEFRLVPKQF DRLVKSMRTM MDRVRVQERL
VLKLCVEQAK MPKKNFVKLF TGNETNLDWF NTEKASTKPY AEGLRMVEDD VIRCRTKLAA
VEEETGLAIS AIKDINRRMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ
EGNIGLMKAV DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI
SRQMLQEMGR EPSPEELAER MMMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDT
TLELPLDSAT SESLKNATHE VLAGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER
IRQIEAKALR KLRHPSRSEI LKSFLDE
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